Teaching

2022

Image data science with Python and Napari, virtual course at EPFL Lausanne
Materials

Quantitative the Bio-Image Analysis with Python, Course organized by the IMPRS and DIGS-BB graduate schools, CSDB Dresden
Materials

Bio-image analysis, biostatistics, programming and machine learning for computational biology, Lecture in Molecular Bioengineering (Master) and Molecular Biology and Biotechnology (Bachelor) at BIOTEC, TU Dresden
Materials

Customizing ImageJ/Fiji using ImageJ Macro + Interactive Design of GPU-accelerated Image Data Flow Graphs in Fiji, Workshop Image analysis and data processing in the super-resolution microscopy, Faculty of Science, Charles University Prague
Slides

3D Image Data Science with open tools & CLIJ crash course: GPU-accelerated image processing in Fiji, EMBO Practical Course on Lightsheet Microscopy, CEITEC Brno
Website, Slides, Slides, Slides

Tracking cells in microscopy image data, EMBO Course on 3D Developmental Imaging, IGC Oeiras
Website, Slides

Advanced bio-image analysis, image data science & AI, Workshop at Zebrafish PI Meeting, CRTD Dresden
Slides

Current challenges in GPU-accelerated image processing for the life sciences, Guest Lecture in High Performance Computing, TU Dresden
Slides

2021

ImageJ Macro Programming, Centre for Cellular Imaging, Bio-image analysis Course, Gothenburg
Slides

Interactive Data Visualization 101 with Fiji & Friends, HIP Summer School
Slides

Object tracking in images, Seminar at HZDR Dresden
Slides

Quantitative Bio-image Analysis, DIGS-BB Course Principles of Light Microscopy
Slides

Sharing and licensing material, EMBO Workshop on Advanced Methods in Bio-image Analysis
Website, Slides

On-the-fly image processing with Python and napari, Smart Microscopy Workshop - Image analysis to improve remote image acquisition
Slides

2020

Applied Bio-Image Analysis, Lecture in Molecular Bioengineering (Master) and Molecular Biology and Biotechnology (Bachelor) at BIOTEC, TU Dresden
Videos, Slides

GPU-accelerated Image Processing with CLIJ2, NEUBIAS Academy @Home
Video, Slides

Image Registration, Stitching and GPU-Accelerated Image Processing, NEUBIAS TS14 for Early Career Scientists, Bordeaux
Slides

Intelligent Systems for Bio-Image Analysis, Guest Lectures at Faculty of Computer Science, TU Dresden
Slides

2019

GPU-accelerated Image Processing in ImageJ Macro, NEUBIAS Training School 13 for Facility Staff, INESC TEC Porto
Website, Slides

Stitching & Image Registration, NEUBIAS Training School 12 for Early Career Scientists, INESC TEC Porto
Website, Slides

ImageJ Macro Programming & GPU-acceleration, Image Analysis Introductory Course, CCI University of Gothenbourg
Slides

Applied Bio-image analysis, Lecture part of Bioinformatics master programme, Charles University Praque
Slides

Cell tracking with Trackmate, Real-time Image Analysis and more ad-hoc training, MBL Physiology Course, Woods Hole
Link, Link

Applied Bio-image analysis, Lecture part of Molecular Bioengineering master programme at BIOTEC Dresden
Slides

ImageJ API beating - Imglib2, ImageJ2 and the BigDataViewer, NEUBIAS Trainging School 11 for BioImageAnalysts, University of Luxembourg
Website, Slides

Multiview Registration with Fiji and Tracking with Trackmate and Mastodon, NEUBIAS Training School 10 for Early Career Scientists, University of Luxembourg
Website, Slides, Slides

2018

Working with Pixels and Objects in 2D and 3D, NEUBIAS Training School 8 for Early Career Scientists, University of Edinburg
Website, Slides, Slides

Multiview Image Processing in Fiji, EMBO Practical Course on Light Sheet Microscopy, MPI CBG Dresden
Website

2017

Introduction to ImageJ macro programming, Scientific Computing Facility, MPI CBG Dresden
Website, Slides

2016

Introduction to Image Analysis with Fiji, Scientific Computing Facility, MPI CBG Dresden
Website, Website, Slides