220 publication(s) listed in total – filter:
2024
13 publication(s) listed
Uwe Töpfer, Jinhee Ryu, Karla Yanín Guerra Santillán, Jana Schulze, Elisabeth Fischer-Friedrich, Guy Tanentzapf, Christian Dahmann
AdamTS proteases control basement membrane heterogeneity and organ shape in Drosophila
Cell Reports 43(7), 114399
(Jul 23, 2024)
DOI: 10.1016/j.celrep.2024.114399
Liyuan Sui, Christian Dahmann
A cellular tilting mechanism important for dynamic tissue shape changes and cell differentiation in Drosophila
Developmental Cell 59(14), 1794–1808
(Jul 22, 2024)
DOI: 10.1016/j.devcel.2024.04.011
Xi Chen, Rabea Seyboldt, Jens-Uwe Sommer, Frank Jülicher, Tyler Harmon
Droplet Differentiation by a Chemical Switch
Phys. Rev. Lett. 133, 028402
(Jul 9, 2024)
DOI: 10.1103/PhysRevLett.133.028402
Julian Rode, Maja Novak, Benjamin M. Friedrich
Information Theory of Chemotactic Agents Using Both Spatial and Temporal Gradient Sensing
PRX Life 2(2), 023012
(Jun 18, 2024)
DOI: 10.1103/PRXLife.2.023012
Teije C. Middelkoop, Jonas Neipel, Caitlin E. Cornell, Ronald Naumann, Lokesh G. Pimpale, Frank Jülicher, Stephan W. Grill
A cytokinetic ring-driven cell rotation achieves Hertwig’s rule in early development
Proc. Natl. Acad. Sci. USA 121(25), e2318838121
(Jun 13, 2024)
DOI: 10.1073/pnas.2318838121
Laura Meißner, Lukas Niese, Stefan Diez
Helical motion and torque generation by microtubule motors
Current Opinion in Cell Biology 88:102367
(Jun 1, 2024)
DOI: 10.1016/j.ceb.2024.102367
Charlie Duclut, Stefano Bo, Ruben Lier, Jay Armas, Piotr Surówka, Frank Jülicher
Probe particles in odd active viscoelastic fluids: How activity and dissipation determine linear stability
Phys. Rev. E 109, 044126
(Apr 10, 2024)
DOI: 10.1103/PhysRevE.109.044126
Maja Illig, Kevin Jahnke, Lukas P Weise, Marlene Scheffold, Ulrike Mersdorf, Hauke Drechsler, Yixin Zhang, Stefan Diez, Jan Kierfeld, Kerstin Göpfrich
Triggered contraction of self-assembled micron-scale DNA nanotube rings
Nat Commun 15(1):2307
(Mar 14, 2024)
DOI: 10.1038/s41467-024-46339-z
Laura Meißner, Lukas Niese, Irene Schüring, Aniruddha Mitra, Stefan Diez
Human kinesin-5 KIF11 drives the helical motion of anti-parallel and parallel microtubules around each other
EMBO J 43:1244–1256
(Feb 29, 2024)
DOI: 10.1038/s44318-024-00048-x
Iaroslav Babenko, Nils Kröger, Benjamin M. Friedrich
Mechanism of branching morphogenesis inspired by diatom silica formation
PNAS 121(10) e2309518121
(Feb 29, 2024)
DOI: 10.1073/pnas.2309518121
Lea Happel, Axel Voigt
Coordinated Motion of Epithelial Layers on Curved Surfaces
Phys. Rev. Lett. 132, 078401
(Feb 13, 2024)
DOI: 10.1103/PhysRevLett.132.078401
K. Yanín Guerra Santillán, Christian Dahmann, Elisabeth Fischer-Friedrich
Elastic Contractile Stress in the Basement Membrane Generates Basal Tension in Epithelia
PRX Life 2, 013004
(Jan 23, 2024)
DOI: 10.1103/PRXLife.2.013004
Francine Kolley, Clara Sidor, Benoit Dehapiot, Frank Schnorrer, Benjamin M. Friedrich
Mechanisms of Sarcomere Assembly in Muscle Cells Inferred from Sequential Ordering of Myofibril Components
PRX Life 2(1), 013002
(Jan 11, 2024)
DOI: 10.1103/PRXLife.2.013002
2023
38 publication(s) listed
Elena Bachini, Veit Krause, Ingo Nitschke, Axel Voigt
Derivation and simulation of a two-phase fluid deformable surface model
Journal of Fluid Mechanics 977:A41
(Dec 21, 2023)
DOI: 10.1017/jfm.2023.943
Romina Piscitello-Gómez, Franz S Gruber, Abhijeet Krishna, Charlie Duclut, Carl D Modes, Marko Popović, Frank Jülicher, Natalie A Dye, Suzanne Eaton
Core PCP mutations affect short-time mechanical properties but not tissue morphogenesis in the Drosophila pupal wing
eLife 12:e85581
(Dec 20, 2023)
DOI: 10.7554/eLife.85581
Piotr Surówka, Anton Souslov, Frank Jülicher, Debarghya Banerjee
Odd Cosserat Elasticity in Active Materials
Phys. Rev. E 108, 064609
(Dec 15, 2023)
DOI: 10.1103/PhysRevE.108.064609
Abhinav Singh, Ivo F. Sbalzarini, Anas Obeidat
Entropically damped artificial compressibility for the discretization corrected particle strength exchange method in incompressible fluid mechanics
Computers & Fluids 267, 106074
(Dec 15, 2023)
DOI: 10.1016/j.compfluid.2023.106074
Jonathan Bauermann, Giacomo Bartolucci, Job Boekhoven, Christoph A. Weber, Frank Jülicher
Formation of Liquid Shells in Active Droplet systems
Phys. Rev. Research 5, 043246
(Dec 14, 2023)
DOI: 10.1103/PhysRevResearch.5.043246
Tommaso Bianucci, Christoph Zechner
A local polynomial moment approximation for compartmentalized biochemical systems
Math Biosci 367:109110
(Dec 8, 2023)
DOI: 10.1016/j.mbs.2023.109110
Josefine Metzkes-Ng, Florian-Emanuel Brack, Florian Kroll, Constantin Bernert, Stefan Bock, Elisabeth Bodenstein, Michael Brand, Thomas E. Cowan, René Gebhardt, Stefan Hans, Uwe Helbig, Felix Horst, Jeannette Jansen, Stephan D. Kraft, Mechthild Krause, Elisabeth Leßmann, Steffen Löck, Jörg Pawelke, Thomas Püschel, Marvin Reimold, Martin Rehwald, Christian Richter, Hans-Peter Schlenvoigt, Ulrich Schramm, Michael Schürer, Joao Seco, Emília Rita Szabó, Marvin E. P. Umlandt, Karl Zeil, Tim Ziegler, Elke Beyreuther
The DRESDEN PLATFORM is a research hub for ultra-high dose rate radiobiology
Sci Rep 13(1):20611
(Nov 23, 2023)
DOI: 10.1038/s41598-023-46873-8
Ashwin I. D’Souza, Rahul Grover, Gina A. Monzon, Ludger Santen, Stefan Diez
Vesicles driven by dynein and kinesin exhibit directional reversals without regulators
Nat Commun 14, 7532
(Nov 20, 2023)
DOI: 10.1038/s41467-023-42605-8
Qinghao Yu, Hannah E Walters, Giovanni Pasquini, Sumeet Pal Singh, Martina Lachnit, Catarina R Oliveira, Daniel León-Periñán, Andreas Petzold, Preethi Kesavan, Cristina Subiran Adrados, Ines Garteizgogeascoa, Dunja Knapp, Anne Wagner, Andrea Bernardos, María Alfonso, Gayathri Nadar, Alwin M Graf, Konstantin E Troyanovskiy, Andreas Dahl, Volker Busskamp, Ramón Martínez-Máñez, Maximina H Yun
Cellular senescence promotes progenitor cell expansion during axolotl limb regeneration
Dev Cell 58(22):2416-2427.e7
(Nov 20, 2023)
DOI: 10.1016/j.devcel.2023.09.009
Archit Bhatnagar, Michael Nestler, Peter Gross, Mirna Kramar, Mark Leaver, Axel Voigt, Stephan W. Grill
Axis convergence in C. elegans embryos
Current Biology 33, 1–13
(Nov 17, 2023)
DOI: 10.1016/j.cub.2023.10.050
Mansi Gupta, Thomas Kurth, Fabian Heinemann, Petra Schwille, Sebastian Keil, Franziska Knopf, Michael Brand
Fine-tuning of Fgf8 morphogen gradient by heparan sulfate proteoglycans in the extracellular matrix
bioRxiv 2023.11.02.565243
(Nov 2, 2023)
DOI: 10.1101/2023.11.02.565243
Aboutaleb Amiri, Charlie Duclut, Frank Jülicher, Marko Popović
Random Traction Yielding Transition in Epithelial Tissues
Phys. Rev. Lett. 131, 188401
(Oct 30, 2023)
DOI: 10.1103/PhysRevLett.131.188401
Andreas Hartmann, Koushik Sreenivasa, Mathias Schenkel, Neharika Chamachi, Philipp Schake, Georg Krainer, Michael Schlierf
An automated single-molecule FRET platform for high-content, multiwell plate screening of biomolecular conformations and dynamics
Nat Commun 14, 6511
(Oct 16, 2023)
DOI: 10.1038/s41467-023-42232-3
Ping Liu, Nils Schumann, Fabian Abele, Fazheng Ren, Marcel Hanke, Yang Xin, Andreas Hartmann, Michael Schlierf, Adrian Keller, Weilin Lin*, Yixin Zhang*
Thermophoretic Analysis of Biomolecules across the Nanoscales in Self-Assembled Polymeric Matrices
ACS Appl. Nano Mater
(Oct 10, 2023)
* corresponding authors
DOI: 10.1021/acsanm.3c03623
Rohit Krishnan Harish, Mansi Gupta, Daniela Zöller, Hella Hartmann, Ali Gheisari, Anja Machate, Stefan Hans, Michael Brand
Real-time monitoring of an endogenous Fgf8a gradient attests to its role as a morphogen during zebrafish gastrulation
Development 150(19):dev201559
(Oct 3, 2023)
DOI: 10.1242/dev.201559
Abhinav Singh, Philipp H. Suhrcke, Pietro Incardona, Ivo F. Sbalzarini
A numerical solver for active hydrodynamics in three dimensions and its application to active turbulence
Physics of Fluids 35(10):105155
(Oct 1, 2023)
DOI: 10.1063/5.0169546
Valentin Ruffine, Andreas Hartmann, Annika Frenzel, Michael Schlierf, Elisabeth Fischer-Friedrich
Twofold Mechanosensitivity Ensures Actin Cortex Reinforcement upon Peaks in Mechanical Tension
Adv. Physics Res, 2300046
(Sep 3, 2023)
DOI: 10.1002/apxr.202300046
Belin Selcen Beydag-Tasöz, Joyson Verner D’Costa, Lena Hersemann, Byung Ho Lee, Federica Luppino, Yung Hae Kim, Christoph Zechner, Anne Grapin-Botton
Integrating single-cell imaging and RNA sequencing datasets links differentiation and morphogenetic dynamics of human pancreatic endocrine progenitors
Dev Cell, 2023. 58(21):2292–2308.e6
(Aug 16, 2023)
DOI: 10.1016/j.devcel.2023.07.019
Oliver Bludau, Anke Weber, Viktoria Bosak, Veronika Kuscha, Kristin Dietrich, Stefan Hans, Michael Brand
Successful regeneration of the adult zebrafish retina is dependent on inflammatory signaling
bioRxiv 2023.08.11.552956;
(Aug 16, 2023)
DOI: 10.1101/2023.08.11.552956
Suryanarayana Maddu, Dominik Sturm, Bevan L. Cheeseman, Christian L. Müller, Ivo F. Sbalzarini
STENCIL-NET for equation-free forecasting from data
Sci Rep 13, 12787
(Aug 7, 2023)
DOI: 10.1038/s41598-023-39418-6
Justina Stark, Ivo F. Sbalzarini
An open-source pipeline for solving continuous reaction-diffusion models in image-based geometries of porous media
Journal of Computational Science 72, 102118
(Aug 7, 2023)
DOI: 10.1016/j.jocs.2023.102118
Abhinav Singh, Alejandra Foggia, Pietro Incardona, Ivo F. Sbalzarini
A Meshfree Collocation Scheme for Surface Differential Operators on Point Clouds
J Sci Comput 96, 89
(Aug 7, 2023)
DOI: 10.1007/s10915-023-02313-3
Ryota Takaki, Louise Jawerth, Marko Popović, Frank Jülicher
Theory of Rheology and Aging of Protein Condensates
PRX Life, 1, 013006
(Aug 4, 2023)
DOI: 10.1103/PRXLife.1.013006
Veit Krause, Axel Voigt
A numerical approach for fluid deformable surfaces with conserved enclosed volume
Journal of Computational Physics, 486, 112097,
(Aug 1, 2023)
DOI: 10.1016/j.jcp.2023.112097
Abhinav Singh, Quentin Vagne, Frank Jülicher, Ivo F. Sbalzarini
Spontaneous Flow Instabilities of Active Polar Fluids in Three Dimensions
Phys. Rev. Research, 5, L022061
(Jun 22, 2023)
DOI: 10.1103/PhysRevResearch.5.L022061
Jorge Lázaro, Maria Costanzo, Marina Sanaki-Matsumiya, Charles Girardot, Masafumi Hayashi, Katsuhiko Hayashi, Sebastian Diecke, Thomas B Hildebrandt, Giovanna Lazzari, Jun Wu, Stoyan Petkov, Rüdiger Behr, Vikas Trivedi*, Mitsuhiro Matsuda*, Miki Ebisuya*
A stem cell zoo uncovers intracellular scaling of developmental tempo across mammals
Cell Stem Cell, 30, 938–949
(Jun 20, 2023)
* co-corresponding
DOI: 10.1016/j.stem.2023.05.014
Elisa Nerli, Jenny Kretzschmar, Tommaso Bianucci, Mauricio Rocha-Martins, Christoph Zechner, Caren Norden
Deterministic and probabilistic fate decisions co-exist in a single retinal lineage
EMBO J 42(14):e112657
(May 15, 2023)
DOI: 10.15252/embj.2022112657
Rahul O. Ramakrishnan, Benjamin M. Friedrich
Learning run-and-tumble chemotaxis with support vector machines
EPL 142 47001
(May 12, 2023)
DOI: 10.1209/0295-5075/acd0d3
Anupam Singh, Joan Antoni Soler, Janelle Lauer, Stephan W. Grill, Marcus Jahnel, Marino Zerial, Shashi Thutupalli
Two-component molecular motor driven by a GTPase cycle
Nat. Phys.
(May 4, 2023)
DOI: 10.1038/s41567-023-02009-3
Veikko F. Geyer, Stefan Diez
Horizontal Magnetic Tweezers to Directly Measure the Force-Velocity Relationship for Multiple Kinesin Motors
Small 2300558
(Apr 10, 2023)
DOI: 10.1002/smll.202300558
Hannah E. Walters, Konstantin E. Troyanovskiy, Alwin M. Graf, Maximina H. Yun
Senescent cells enhance newt limb regeneration by promoting muscle dedifferentiation
Aging Cell, 22, e013826
(Apr 6, 2023)
DOI: 10.1111/acel.13826
Elena Bachini, Veit Krause, Axel Voigt
The interplay of geometry and coarsening in multicomponent lipid vesicles under the influence of hydrodynamics
Physics of Fluids 35, 042102
(Apr 5, 2023)
DOI: 10.1063/5.0145884
Ganesh Agam, Christian Gebhardt, Milana Popara, Rebecca Mächtel, Julian Folz, Benjamin Ambrose, Neharika Chamachi, Sang Yoon Chung, Timothy D. Craggs, Marijn de Boer, Dina Grohmann, Taekjip Ha, Andreas Hartmann, Jelle Hendrix, Verena Hirschfeld, Christian G. Hübner, Thorsten Hugel, Dominik Kammerer, Hyun-Seo Kang, Achillefs N. Kapanidis, Georg Krainer, Kevin Kramm, Edward A. Lemke, Eitan Lerner, Emmanuel Margeat, Kirsten Martens, Jens Michaelis, Jaba Mitra, Gabriel G. Moya Muñoz, Robert B. Quast, Nicole C. Robb, Michael Sattler, Michael Schlierf, Jonathan Schneider, Tim Schröder, Anna Sefer, Piau Siong Tan, Johann Thurn, Philip Tinnefeld, John van Noort, Shimon Weiss, Nicolas Wendler, Niels Zijlstra, Anders Barth, Claus A. M. Seidel, Don C. Lamb, Thorben Cordes
Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins
Nat Methods
(Mar 27, 2023)
DOI: 10.1038/s41592-023-01807-0
Lucas Kuhrts, Lukas Helmbrecht, Willem L. Noorduin, Darius Pohl, Xiaoxiao Sun, Alexander Palatnik, Cornelia Wetzker, Anne Jantschke, Michael Schlierf, Igor Zlotnikov
Recruiting Unicellular Algae for the Mass Production of Nanostructured Perovskites
Adv. Sci.2023, 2300355
(Feb 12, 2023)
DOI: 10.1002/advs.202300355
Christa Ringers, Stephan Bialonski, Mert Ege, Anton Solovev, Jan Niklas Hansen, Inyoung Jeong, Benjamin M Friedrich, Nathalie Jurisch-Yaksi
Novel analytical tools reveal that local synchronization of cilia coincides with tissue-scale metachronal waves in zebrafish multiciliated epithelia
eLife 12:e77701
(Jan 26, 2023)
DOI: 10.7554/eLife.77701
Christoph R. Meinecke, Georg Heldt, Thomas Blaudeck, Frida W. Lindberg, Falco C. M. J. M. van Delft, Mohammad Ashikur Rahman, Aseem Salhotra, Alf Månsson, Heiner Linke, Till Korten, Stefan Diez, Danny Reuter, Stefan E. Schulz
Nanolithographic fabrication technologies for network-based biocomputation devices
Materials 16 (3) 1046
(Jan 24, 2023)
DOI: 10.3390/ma16031046
Anne-Lena Moor, Christoph Zechner
Dynamic information transfer in stochastic biochemical networks
Physical Review Research 5(1):013032
(Jan 23, 2023)
DOI: 10.1103/PhysRevResearch.5.013032
Joël Mabillard, Christoph A. Weber, Frank Jülicher
Heat Fluctuations in Chemically Active Systems
Phys. Rev. E 107, 014118
(Jan 13, 2023)
DOI: 10.1103/PhysRevE.107.014118
2022
46 publication(s) listed
Alessandro Mongera, Marie Pochitaloff, Hannah J. Gustafson, Georgina A. Stooke-Vaughan, Payam Rowghanian, Sangwoo Kim, Otger Campàs.
Mechanics of the cellular microenvironment as probed by cells in vivo during zebrafish presomitic mesoderm differentiation
Nat. Mater. 22, 135–143
(Dec 28, 2022)
DOI: 10.1038/s41563-022-01433-9
Christoph Heintze, Iaroslav Babenko, Jirina Zackova Suchanova, Alastair Skeffington, Benjamin M. Friedrich, Nils Kröger
The molecular basis for pore pattern morphogenesis in diatom silica
Proc Natl Acad Sci U S A 119(49):e2211549119
(Dec 2, 2022)
DOI: 10.1073/pnas.2211549119
Keisuke Ishihara, Arghyadip Mukherjee, Elena Gromberg, Jan Brugués, Elly M. Tanaka, Frank Jülicher
Topological Morphogenesis of Neuroepithelial Organoids
Nature Physics, 19, 177–183 (2023)
(Nov 21, 2022)
DOI: 10.1038/s41567-022-01822-6
Rahul O. Ramakrishnan, Andrea Auconi and Benjamin M. Friedrich
Learning stochastic filtering
EPL 140 31002
(Nov 17, 2022)
DOI: 10.1209/0295-5075/ac9d01
Tina Subic, Ivo F. Sbalzarini
A Gaussian jump process formulation of the reaction-diffusion master equation enables faster exact stochastic simulations
J. Chem. Phys. 157, 194110
(Nov 17, 2022)
DOI: 10.1063/5.0123073
Frank Jülicher, Jacques Prost, John Toner
Broken Living Layers: Dislocations in Active Smectic Liquid Crystals
Phys. Rev. E 106, 054607
(Nov 15, 2022)
DOI: 10.1103/PhysRevE.106.054607
Jingyuan Zhu, Aseem Salhotra, Christoph Robert Meinecke, Pradheebha Surendiran, Roman Lyttleton, Danny Reuter, Hillel Kugler, Stefan Diez, Alf Månsson, Heiner Linke, Till Korten
Solving the 3-SAT problem using network-based biocomputation
Adv. Intell. Syst. 2200202
(Oct 26, 2022)
DOI: 10.1002/aisy.202200202
Anna Svirina, Neharika Chamachi, Michael Schlierf
Single-molecule approaches reveal outer membrane protein biogenesis dynamics
BioEssays, 00, e2200149
(Oct 25, 2022)
DOI: 10.1002/bies.202200149
Mathias Schenkel, Dorna Ravamehr-Lake, Tomasz Czerniak, James P.Saenz, Georg Krainer, Michael Schlierf, Charles M. Deber
Impact of cholesterol and Lumacaftor on the folding of CFTR helical hairpins
Biochim Biophys Acta Biomembr 184078
(Oct 21, 2022)
DOI: 10.1016/j.bbamem.2022.184078
Nicole Poulsen, Helene Hennig, Veikko F Geyer, Stefan Diez, Richard Wetherbee, Sorel Fitz-Gibbon, Matteo Pellegrini, Nils Kröger
On the role of cell surface associated, mucin-like glycoproteins in the pennate diatom Craspedostauros Australis (Bacillariophyceae)
J. Phycol. 59, 54–69 (2023)
(Oct 5, 2022)
DOI: 10.1111/jpy.13287
Adrian Pascal Nievergelt, Ilia Zykov, Dennis Diener, Aditya Chhatre, Tim-Oliver Buchholz, Markus Delling, Stefan Diez, Florian Jug, Luděk Štěpánek, Gaia Pigino
Conversion of anterograde into retrograde trains is an intrinsic property of intraflagellar transport
Current Biology 32(18), R967–R969
(Sep 26, 2022)
DOI: 10.1016/j.cub.2022.07.033
Anastasia Solomatina, Alice Cezanne, Yannis Kalaidzidis, Marino Zerial, Ivo F Sbalzarini
Design centering enables robustness screening of pattern formation models
Bioinformatics, 38, 2022, ii134–ii140
(Sep 18, 2022)
DOI: 10.1093/bioinformatics/btac480
Johanna E M Dickmann, Jochen C Rink, Frank Jülicher
Long-range morphogen gradient formation by cell-to-cell signal propagation
Phys. Biol. 19, 066001
(Sep 7, 2022)
DOI: 10.1088/1478-3975/ac86b4
Victoria Tianjing Yan, Arjun Narayanan, Tina Wiegand, Frank Jülicher, Stephan W. Grill
A Condensate Dynamic Instability Orchestrates Actomyosin Cortex Activation
Nature.
(Aug 17, 2022)
DOI: 10.1038/s41586-022-05084-3
Falco C M J M van Delf, Alf Månsson, Hillel Kugler, Till Korten, Cordula Reuther, Jingyuan Zhu, Roman Lyttleton, Thomas Blaudeck, Christoph Robert Meinecke, Danny Reuter, Stefan Diez, Heiner Linke
Roadmap for network-based bio-computation
Nano Futures 6, 032002
(Aug 9, 2022)
DOI: 10.1088/2399-1984/ac7d81
Mirco Bonati, Lucas Daniel Wittwer, Sebastian Aland, Elisabeth Fischer-Friedrich
On the role of mechanosensitive binding dynamics in the pattern formation of active surfaces
New J. Phys. 24 073044
(Aug 8, 2022)
DOI: 10.1088/1367-2630/ac806d
Marie Pochitaloff, Martin Miranda, Mathieu Richard, Atitheb Chaiyasitdhi, Yasuharu Takagi, Wenxiang Cao, Enrique M. De La Cruz, James R. Sellers, Jean-François Joanny, Frank Jülicher, Laurent Blanchoin, Pascal Martin
Flagella-like beating of actin bundles driven by self-organized myosin waves
Nat. Phys.
(Aug 8, 2022)
DOI: 10.1038/s41567-022-01688-8
Jonathan Bauermann, Christoph A. Weber, Frank Jülicher
Energy and Matter Supply for Active Droplets
Ann. Phys. 2200132.
(Aug 3, 2022)
DOI: 10.1002/andp.202200132
Tetsuya Yamamoto, Helmut Schiessel
Loop extrusion driven volume phase transition of entangled chromosomes
Biophys J. 121(14):2742-2750.
(Jul 19, 2022)
DOI: 10.1016/j.bpj.2022.06.014
Lea Happel, D Wenzel, Axel Voigt
Effects of curvature on epithelial tissue – Coordinated rotational movement and other spatiotemporal arrangements
EPL 138 67002
(Jul 7, 2022)
DOI: 10.1209/0295-5075/ac757a
Pradheebha Surendiran, Christoph Robert Meinecke, Aseem Salhotra, Georg Heldt, Jingyuan Zhu, Alf Månsson, Stefan Diez, Danny Reuter, Hillel Kugler, Heiner Linke, Till Korten
Solving Exact Cover Instances with Molecular-Motor-Powered Network-Based Biocomputation
ACS Nanosci. Au 2(5) 396–403
(Jun 23, 2022)
DOI: 10.1021/acsnanoscienceau.2c00013
Suryanarayana Maddu, Bevan L. Cheeseman, Ivo F. Sbalzarini, Christian L. Müller
Stability selection enables robust learning of differential equations from limited noisy data
Proc. R. Soc. A. 478(2262) Art. No. 20210916
(Jun 15, 2022)
DOI: 10.1098/rspa.2021.0916
Leonhard Karsch, Jörg Pawelke, Michael Brand, Stefan Hans, Katalin Hideghéty, Jeannette Jansen, Elisabeth Lessmann, Steffen Löck, Michael Schürer, Rico Schurig, Joao Seco, Emília Rita Szabó, Elke Beyreuther
Beam pulse structure and dose rate as determinants for the flash effect observed in zebrafish embryo
Radiother Oncol 173:49–54
(May 30, 2022)
DOI: 10.1016/j.radonc.2022.05.025
Jens-Uwe Sommer, Holger Merlitz, Helmut Schiessel
Polymer-Assisted Condensation: A Mechanism for Hetero-Chromatin Formation and Epigenetic Memory
Macromolecules 55, 11, 4841–4851
(May 24, 2022)
DOI: 10.1021/acs.macromol.2c00244
Andrea Auconi, Maja Novak and Benjamin M. Friedrich
Gradient sensing in Bayesian chemotaxis
EPL 138 12001
(May 18, 2022)
DOI: 10.1209/0295-5075/ac6620
Uwe Töpfer, Karla Yanín Guerra-Santillán, Elisabeth Fischer-Friedrich, Christian Dahmann
Distinct contributions of ECM proteins to basement membrane mechanical properties in Drosophila
Development 149(10):dev200456
(May 16, 2022)
DOI: 10.1242/dev.200456
Iaroslav Babenko, Benjamin M. Friedrich, Nils Kröger
Structure and Morphogenesis of the Frustule
The Molecular Life of Diatoms (eds Falciatore, A., Mock, T.), Springer, pp. 287–312
(online: May 12, 2022)
DOI: 10.1007/978-3-030-92499-7_11
Nils Kröger
Biomolecules Involved in Frustule Biogenesis and Function
The Molecular Life of Diatoms (eds Falciatore, A., Mock, T.), Springer, pp. 313–343
(online: May 12, 2022)
DOI: 10.1007/978-3-030-92499-7_12
Foram M. Joshi, Gonzalo Alvarez Viar, Gaia Pigino, Hauke Drechsler, Stefan Diez
Fabrication of high aspect ratio gold nanowires within the microtubule lumen
Nano Lett. 22(9) 3659–3667
(Apr 21, 2022)
DOI: 10.1021/acs.nanolett.2c00255
Michele Gabriele, Hugo B Brandão, Simon Grosse-Holz, Asmita Jha, Gina M Dailey, Claudia Cattoglio, Tsung-Han S Hsieh, Leonid Mirny, Christoph Zechner, Anders S Hansen
Dynamics of CTCF- and cohesin-mediated chromatin looping revealed by live-cell imaging
Science, 376(6592):496–501
(Apr 14, 2022)
DOI: 10.1126/science.abn6583
Carolina Parada, Samhita P. Banavar, Parisa Khalilian, Stephane Rigaud, Arthur Michaut, Yucen Liu, Dennis Manjaly Joshy, Otger Campàs, Jerome Gros
Mechanical feedback defines organizing centers to drive digit emergence
Dev Cell 57(7) 854–866.e6
(Apr 11, 2022)
DOI: 10.1016/j.devcel.2022.03.004
Charlie Duclut, Joris Paijmans, Mandar M. Inamdar, Carl D. Modes, Frank Jülicher
Active T1 Transitions in Cellular Networks
Eur. Phys. J. E. 45(29)
(Mar 23, 2022)
DOI: 10.1140/epje/s10189-022-00175-5
Charlie Duclut, Aboutaleb Amiri, Joris Paijmans, Frank Jülicher
Coarse-grained curvature tensor on polygonal surfaces
SciPost Phys. Core 5, 011
(Mar 11, 2022)
DOI: 10.21468/SciPostPhysCore.5.1.011
Tyler S. Harmon and Frank Jülicher
Molecular Assembly Lines in Active Droplets
Phys. Rev. Lett. 128, 108102
(Mar 9, 2022)
DOI: 10.1103/PhysRevLett.128.108102
Kamran Hosseini, Palina Trus, Annika Frenzel, Carsten Werner, Elisabeth Fischer-Friedrich
Skin epithelial cells change their mechanics and proliferation upon snail-mediated EMT signalling
Soft Matter 18, 2585-2596
(Mar 8, 2022)
DOI: 10.1039/D2SM00159D
Roman Renger, Jose A. Morin, Regis Lemaitre, Martine Ruer-Gruss, Frank Jülicher, Andreas Hermann, Stephan W. Grill
Co-condensation of Proteins with Single- and Double-stranded DNA
Proc. Natl. Acad. Sci. USA 119(10), e2107871119
(Mar 1, 2022)
DOI: 10.1073/pnas.2107871119
Neharika Chamachi, Andreas Hartmann, Mai Quynh Ma , Anna Svirina, Georg Krainer, Michael Schlierf
Chaperones Skp and SurA dynamically expand unfolded OmpX and synergistically disassemble oligomeric aggregates
PNAS 119 (9) e2118919119
(Feb 25, 2022)
DOI: 10.1073/pnas.2118919119
Veit Krause, Axel Voigt
Deformable active nematic particles and emerging edge currents in circular confinements
Eur. Phys. J. E 45, 14
(Feb 17, 2022)
DOI: 10.1140/epje/s10189-022-00162-w
Suryanarayana Maddu, Dominik Sturm, Christian L. Müller and Ivo F. Sbalzarini
Inverse Dirichlet weighting enables reliable training of physics informed neural networks
Machine Learning: Science and Technology, Volume 3, Number 1
(Feb 15, 2022)
DOI: 10.1088/2632-2153/ac3712
Juan M Iglesias-Artola, Björn Drobot, Mrityunjoy Kar, Anatol Fritsch, Hannes Mutschler, T-Y Dora Tang, Moritz Kreysing
Charge-density reduction promotes ribozyme activity in RNA-peptide coacervates via RNA fluidization and magnesium partitioning
Nature Chemistry 2022
(Feb 14, 2022)
DOI: 10.1038/s41557-022-00890-8
Maria Romanova-Michaelides, Zena Hadjivasiliou, Daniel Aguilar-Hidalgo, Dimitris Basagiannis, Carole Seum, Marine Dubois, Frank Jülicher, Marcos Gonzalez-Gaitan
Morphogen gradient scaling by recycling of intracellular Dpp
Nature 602, 287–293
(Feb 10, 2022)
DOI: 10.1038/s41586-021-04346-w
Benjamin A. Dalton, David Oriola, Franziska Decker, Frank Jülicher, Jan Brugués
A Gelation Transition Enables the Self-organization of Bipolar Metaphase Spindles
Nat. Phys.
(Feb 10, 2022)
DOI: 10.1038/s41567-021-01467-x
Barbara Scalvini, Helmut Schiessel, Anatoly Golovnev, Alireza Mashaghi
Circuit topology analysis of cellular genome reveals signature motifs, conformational heterogeneity, and scaling
iScience 25(3):103866
(Feb 5, 2022)
DOI: 10.1016/j.isci.2022.103866
Jose A. Morin, Sina Wittmann, Sandeep Choubey, Adam Klosin, Stefan Golfier, Anthony A. Hyman, Frank Jülicher, Stephan W. Grill
Sequence-dependent Surface Condensation of a Pioneer Transcription Factor on DNA
Nat. Phys.
(Feb 3, 2022)
DOI: 10.1038/s41567-021-01462-2
Cordula Reuther, Paula Santos-Otte, Rahul Grover, Georg Heldt, Günther Woehlke, Stefan Diez
Multiplication of Motor-driven Microtubules for Nanotechnological Applications
Nano Lett. 22(3) 926–934
(Jan 20, 2022)
DOI: 10.1021/acs.nanolett.1c03619
David T. Gonzales, Naresh Yandrapalli, Tom Robinson, Christoph Zechner, T-Y. Dora Tang
Cell-Free Gene Expression Dynamics in Synthetic Cell Populations
ACS Synth Biol 11(1):205–215
(Jan 4, 2022)
DOI: 10.1021/acssynbio.1c00376
2021
61 publication(s) listed
Jesse V. Veenvliet, Pierre-François Lenne, David A. Turner, Iftach Nachman, Vikas Trivedi
Sculpting with stem cells: how models of embryo development take shape
Development 148 (24): dev192914
(Dec 15, 2021)
DOI: 10.1242/dev.192914
Karl B. Hoffmann, Ivo F. Sbalzarini
Estimation of unordered core size using a robustness measure for topological defects in discretized orientation and vector fields
Proc. Appl. Math. Mech., 21(1): e202100105
(Dec 14, 2021)
DOI: 10.1002/pamm.202100105
Robert Kuschmierz, Elias Scharf, David F. Ortegón-González, Tom Glosemeyer, Jürgen W. Czarske
Ultra-thin 3D lensless fiber endoscopy using diffractive optical elements and deep neural networks
Light: Advanced Manufacturing 2, Article number: 30
(Dec 6, 2021)
DOI: 10.37188/lam.2021.030
Cordula Reuther, Sönke Steenhusen, Christoph Robert Meinecke, Pradheebha Surendiran, Aseem Salhotra, Frida W Lindberg, Alf Månsson, Heiner Linke, Stefan Diez
Molecular motor-driven filament transport across three-dimensional, polymeric micro-junctions
New J. Phys. 23, 125002
(Dec 2, 2021)
DOI: 10.1088/1367-2630/ac39b4
Stefano Bo, Lars Hubatsch, Jonathan Bauermann, Christoph A. Weber, Frank Jülicher
Stochastic dynamics of single molecules across phase boundaries
Phys. Rev. Research 3, 043150,
(Dec 2, 2021)
DOI: 10.1103/PhysRevResearch.3.043150
Xueping Zhao, Giacomo Bartolucci, Alf Honigmann, Frank Jülicher, Christoph A Weber
Thermodynamics of Wetting, Prewetting and Surface Phase Transitions with Surface Binding
New J. Phys. 23, 123003,
(Dec 1, 2021)
DOI: 10.1088/1367-2630/ac320b
D. Wenzel and A. Voigt
Multiphase field models for collective cell migration
Phys. Rev. E 104, 054410
(Nov 24, 2021)
DOI: 10.1103/PhysRevE.104.054410
Dalileh Nabi, Hauke Drechsler, Johannes Pschirer, Franz Korn, Nadine Schuler, Stefan Diez, Rolf Jessberger, Mariola Chacón
CENP-V is required for proper chromosome segregation through interaction with spindle microtubules in mouse oocytes
Nat Commun 12, 6547
(Nov 11, 2021)
DOI: 10.1038/s41467-021-26826-3
Iliya D. Stoev, Benjamin Seelbinder, Elena Erben, Nicola Maghelli, Moritz Kreysing
Highly sensitive force measurements in an optically generated, harmonic hydrodynamic trap
eLight, 1, 7
(Oct 23, 2021)
DOI: 10.1186/s43593-021-00007-7
Sara N. Nagelberg*, Jan F. Totz*, Matthäus Mittasch, Vishnu Sresht, Lukas Zeininger, Timothy M Swager, Moritz Kreysing, Mathias Kolle
Actuation of Janus Emulsion Droplets via Optothermally Induced Marangoni Forces
Phys Rev Lett 127(14):144503
(Oct 1, 2021)
DOI: 10.1103/PhysRevLett.127.144503
Charlie Duclut, Joris Paijmans, Mandar M Inamdar, Carl D. Modes, Frank Jülicher
Nonlinear Rheology of Cellular Networks
Cells and Development, 203746
(Sep 27, 2021)
DOI: 10.1016/j.cdev.2021.203746
Abhinav Singh, Pietro Incardona, Ivo F. Sbalzarini
A C++ expression system for partial differential equations enables generic simulations of biological hydrodynamics
Eur. Phys. J. E 44, 117 (2021).
(Sep 23, 2021)
DOI: 10.1140/epje/s10189-021-00121-x
Anatol W. Fritsch, Andrés F. Diaz-Delgadillo, Omar Adame-Arana, Carsten Hoege, Matthäus Mittasch, Moritz Kreysing, Mark Leaver, Anthony A. Hyman, Frank Jülicher, and Christoph A. Weber
Local thermodynamics govern formation and dissolution of Caenorhabditis elegans P granule condensates
PNAS September 14, 2021 118 (37) e2102772118
(Sep 14, 2021)
DOI: 10.1073/pnas.2102772118
Elena Erben, Benjamin Seelbinder, Iliya D. Stoev, Sergei Klykov, Nicola Maghelli, Moritz Kreysing
Feedback-based positioning and diffusion suppression of particles via optical control of thermoviscous flows
Opt Express, 29(19):30272–30283
(Sep 13, 2021)
DOI: 10.1364/oe.432935
Tobias Pietzsch, Lorenzo Duso, Christoph Zechner
Compartor: a toolbox for the automatic generation of moment equations for dynamic compartment populations
Bioinformatics 37(17):2782–2784
(Sep 9, 2021)
DOI: 10.1093/bioinformatics/btab058
Lange S, Friedrich BM
Network permeability changes according to a quadratic power law upon removal of a single edge
EPL, 134 (2021) 64002
(Sep 2, 2021)
DOI: 10.1209/0295-5075/134/64002
Ondřej Kucera, Valerie Siahaan, Daniel Janda, Sietske H. Dijkstra, Eliška Pilátová, Eva Zatecka, Stefan Diez, Marcus Braun, Zdenek Lansky
Anillin propels myosin-independent constriction of actin rings
Nat Commun 12, 4595
(Jul 28, 2021)
DOI: 10.1038/s41467-021-24474-1
Rank M, Voigt A
Active flows on curved surfaces
Physics of Fluids 33, 072110
(Jul 21, 2021)
DOI: 10.1063/5.0056099
Thomas Quail, Stefan Golfier, Maria Elsner, Keisuke Ishihara, Vasanthanarayan Murugesan, Roman Renger, Frank Jülicher, Jan Brugués
Force generation by protein–DNA co-condensation
Nat. Phys.
(Jul 8, 2021)
DOI: 10.1038/s41567-021-01285-1
Britta Pester, Oliver Winke, Carolin Ligges, Raimund Dachselt, Stefan Gumhold
Immersive 3D Visualization of Multi-Modal Brain Connectivity
In EuroVis Workshop on Visual Analytics (EuroVA). EuroVA ’21 The Eurographics Association.
(Jun 14, 2021)
DOI: 10.2312/eurova.20211091
Nesrine Khouzami, Lars Schütze, Pietro Incardona, Landfried Kraatz, Tina Subic, Jeronimo Castrillon, Ivo F. Sbalzarini
The OpenPME Problem Solving Environment for Numerical Simulations
In Proc. Intl. Conf. on Computational Science (ICCS), volume 12742 of Lecture Notes in Computer Science, pages 614–627
(Jun 9, 2021)
DOI: 10.1007/978-3-030-77961-0_49
Zeyu Gao, Hannes Radner, Lars Büttner, Hongwei Ye, Xinyang Li, Jürgen Czarske
Distortion correction for particle image velocimetry using multiple-input deep convolutional neural network and Hartmann-Shack sensing
Opt Express 29(12):18669–18687
(Jun 7, 2021)
DOI: 10.1364/oe.419591
Dr. Justus A. Kromer, Dr. Andrea Auconi, Prof. Dr. Benjamin M. Friedrich
Composite search of active particles in three-dimensional space based on non-directional cues
ChemNanoMat 7(9):1057
(May 26, 2021)
DOI: 10.1002/cnma.202100156
Tetsuya Yamamoto, Takahiro Sakaue, Helmut Schiessel
Slow chromatin dynamics enhances promoter accessibility to transcriptional condensates
Nucleic Acids Res. 49(9):5017-5027.
(May 21, 2021)
DOI: 10.1093/nar/gkab275
Kamran Hosseini, Annika Frenzel, Elisabeth Fischer-Friedrich
EMT changes actin cortex rheology in a cell-cycle-dependent manner
Biophysical Journal, In Press, Corrected Proof
(May 20, 2021)
DOI: 10.1016/j.bpj.2021.05.006
Chartier NT, Mukherjee A, Pfanzelter J, Fürthauer S, Larson BT, Fritsch AW, Amini R, Kreysing M, Jülicher F, Grill SW
A hydraulic instability drives the cell death decision in the nematode germline
Nature Physics,
(May 20, 2021)
DOI: 10.1038/s41567-021-01235-x
Middelkoop TC, Garcia-Baucells J, Quintero-Cadena P, Pimpale LG, Yazdi S, Sternberg PW, Gross P, Grill SW
CYK-1/Formin activation in cortical RhoA signaling centers promotes organismal left–right symmetry breaking
PNAS May 18, 2021 118 (20) e2021814118
(May 18, 2021)
DOI: 10.1073/pnas.2021814118
Jiawei Sun, Nektarios Koukourakis, Jochen Guck, Jürgen W. Czarske
Rapid computational cell-rotation around arbitrary axes in 3D with multi-core fiber
Biomed. Opt. Express 12(6):3423–3437
(May 17, 2021)
DOI: 10.1364/BOE.423035
Charlie Duclut, Jacques Prost, Frank Jülicher
Hydraulic and Electric Control of Cell Spheroids
PNAS May 11, 2021 118 (19) e2021972118,
(May 11, 2021)
DOI: 10.1073/pnas.2021972118
Striggow F, Nadporozhskaia L, Friedrich BM, Schmidt OG, Medina-Sánchez M
Micromotor-mediated sperm constrictions for improved swimming performance
Eur. Phys. J. E 44:67, 20221
(May 11, 2021)
DOI: 10.1140/epje/s10189-021-00050-9
Scarselli D, Budanur NB, Timme M, Hof B
Discontinuous epidemic transition due to limited testing
Nat Commun 12, 2586,
(May 10, 2021)
DOI: 10.1038/s41467-021-22725-9
Luo W, Lehmann A, Yang Y, Dachselt R
Investigating Document Layout and Placement Strategies for Collaborative Sensemaking in Augmented Reality
Extended Abstracts of the 2021 CHI Conference on Human Factors in Computing Systems (CHI EA ’21). Association for Computing Machinery, Article 456, 1–7.
(May 8, 2021)
DOI: 10.1145/3411763.3451588
Marc Satkowski, Wolfgang Büschel, Raimund Dachselt
Experiences with User Studies in Augmented Reality
CHI 2021 Workshop on Evaluating User Experiences in Mixed Reality,
(May 7, 2021)
DOI: 10.48550/arXiv.2104.03795
Satkowski M, Dachselt R
Investigating the Impact of Real-World Environments on the Perception of 2D Visualizations in Augmented Reality
Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems (CHI ’21). Association for Computing Machinery, Article 522, 1–15.
(May 6, 2021)
DOI: 10.1145/3411764.3445330
Langner R, Satkowski M, Büschel W, Dachselt R
MARVIS: Combining Mobile Devices and Augmented Reality for Visual Data Analysis
Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems (CHI ’21). Association for Computing Machinery, Article 468, 1–17.
(May 6, 2021)
DOI: 10.1145/3411764.3445593
Büschel W, Lehmann A, Dachselt R
MIRIA: A Mixed Reality Toolkit for the In-Situ Visualization and Analysis of Spatio-Temporal Interaction Data
Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems (CHI ’21). Association for Computing Machinery, Article 470, 1–15.
(May 6, 2021)
DOI: 10.1145/3411764.3445651
Jörg Pawelke, Michael Brand, Stefan Hans, Katalin Hideghéty, Leonhard Karsch, Elisabeth Lessmann, Steffen Löck, Michael Schürer, Emília Rita Szabó, Elke Beyreuther
Electron dose rate and oxygen depletion protect zebrafish embryos from radiation damage
Radiother Oncol 158:7–12
(May 2021)
DOI: 10.1016/j.radonc.2021.02.003
Jiawei Sun, Nektarios Koukourakis, and Jürgen W. Czarske
Complex Wavefront Shaping through a Multi-Core Fiber
Appl. Sci. 2021, 11, 3949
(Apr 27, 2021)
DOI: 10.3390/app11093949
Samhita P. Banavar, Emmet K. Carn, Payam Rowghanian, Georgina Stooke-Vaughan, Sangwoo Kim, Otger Campàs
Mechanical control of tissue shape and morphogenetic flows during vertebrate body axis elongation
Scientific Reports 11 (1), 1–14
(Apr 21, 2021)
DOI: 10.1038/s41598-021-87672-3
Suryanarayana Maddu, Bevan L. Cheeseman, Christian L. Müller, Ivo F. Sbalzarini
Learning physically consistent differential equation models from data using group sparsity
Phys. Rev. E 103, 042310
(Apr 13, 2021)
DOI: 10.1103/PhysRevE.103.042310
Sangwoo Kim, Marie Pochitaloff, Georgina A. Stooke-Vaughan, Otger Campàs
Embryonic tissues as active foams
Nat. Phys.
(Apr 12, 2021)
DOI: 10.1038/s41567-021-01215-1
Lange S, Friedrich BM
Sperm chemotaxis in marine species is optimal at physiological flow rates according theory of filament surfing
PLoS Comp. Biol., 17(4): e1008826
(Apr 12, 2021)
DOI: 10.1371/journal.pcbi.1008826
Solovev A, Friedrich BM
Lagrangian Mechanics of Active Systems
Eur. Phys. J. E, 44:49, 2021
(Apr 8, 2021)
DOI: 10.1140/epje/s10189-021-00016-x
Novak M, Friedrich BM
Bayesian gradient sensing in the presence of rotational diffusion
New J. Phys., 23:043026
(Apr 8, 2021)
DOI: 10.1088/1367-2630/abdb70
Debarghya Banerjee, Vincenzo Vitelli, Frank Jülicher, Piotr Surówka
Active Viscoelasticity of Odd Materials
Phys. Rev. Lett. 126, 138001,
(Mar 29, 2021)
DOI: 10.1103/PhysRevLett.126.138001
Dye NA, Popović M, Venkatesan Iyer K, Fuhrmann JF, Piscitello-Gómez R, Eaton S, Jülicher F
Self-organized patterning of cell morphology via mechanosensitive feedback
eLife 2021;10:e57964
(Mar 26, 2021)
DOI: 10.7554/eLife.57964
K. Venkatesan Iyer, Anna Taubenberger, Salma Ahmed Zeidan, Natalie A. Dye, Suzanne Eaton, Frank Jülicher
Apico-Basal Cell Compression Regulates Lamin A/C Levels in Epithelial Tissues
Nat Commun 12, 1756,
(Mar 25, 2021)
DOI: 10.1038/s41467-021-22010-9
Marta Urbanska, Annemarie Lüdecke, Wilhelm J. Walter, Antoine M. van Oijen, Karl E. Duderstadt, Stefan Diez
Highly-parallel, microfluidics-based force spectroscopy on single motor proteins
Small 17(18) 2007388
(Mar 23, 2021)
DOI: 10.1002/smll.202007388
Jose Negrete Jr, Iván M Lengyel, Laurel Rohde, Ravi A Desai, Andrew C Oates, Frank Jülicher
Theory of Time Delayed Genetic Oscillations with External Noisy Regulation
New J. Phys. 23, 033030,
(Mar 15, 2021)
DOI: 10.1088/1367-2630/abd80b
Marko Popović, Valentin Druelle, Natalie A Dye, Frank Jülicher, Matthieu Wyart
Inferring the flow properties of epithelial tissues from their geometry
New J. Phys. 23 033004,
(Mar 10, 2021)
DOI: 10.1088/1367-2630/abcbc7
Lennart Hilbert, Yuko Sato, Ksenia Kuznetsova, Tommaso Bianucci, Hiroshi Kimura, Frank Jülicher, Alf Honigmann, Vasily Zaburdaev, Nadine L. Vastenhouw
Transcription Organizes Euchromatin via Microphase Separation
Nat Commun 12, 1360,
(Mar 1, 2021)
DOI: 10.1038/s41467-021-21589-3
Suryanarayana Maddu, Dominik Sturm, Bevan L. Cheeseman, Christian L. Müller, Ivo F. Sbalzarini
Learning Computable Models From Data
WCCM-ECCOMAS2020
(Mar 2021)
DOI: 10.23967/wccm-eccomas.2020.190
Anne Seifert, Hauke Drechsler, Julia Japtok, Till Korten, Stefan Diez, Andreas Hermann
The ALS-Associated FUS (P525L) Variant Does Not Directly Interfere with Microtubule-Dependent Kinesin-1 Motility
Int J Mol Sci 22(5):2422
(Feb 28, 2021)
DOI: 10.3390/ijms22052422
Anders S Hansen, Christoph Zechner
Promoters adopt distinct dynamic manifestations depending on transcription factor context
Mol Syst Biol 17(2):e9821
(Feb 17, 2021)
DOI: 10.15252/msb.20209821
Reipschläger P, Flemisch T, Dachselt R
Personal Augmented Reality for Information Visualization on Large Interactive Displays
IEEE Transactions on Visualization and Computer Graphics, 27 (2), 1182–1192,
(Feb 2021)
DOI: 10.1109/TVCG.2020.3030460
Samhita P Banavar, Michael Trogdon, Brian Drawert, Tau-Mu Yi, Linda R Petzold, Otger Campàs
Coordinating cell polarization and morphogenesis through mechanical feedback
PLoS computational biology 17 (1), e1007971
(Jan 28, 2021)
DOI: 10.1371/journal.pcbi.1007971
James Giammona, Otger Campàs
Physical constraints on early blastomere packings
PLoS Computational Biology 17 (1), e1007994
(Jan 26, 2021)
DOI: 10.1371/journal.pcbi.1007994
Hui-Shun Kuan, Wolfram Pönisch, Frank Jülicher, Vasily Zaburdaev
Continuum Theory of Active Phase Separation in Cellular Aggregates
Phys. Rev. Lett. 126, 018102,
(Jan 4, 2021)
DOI: 10.1103/PhysRevLett.126.018102
Jordi Comelles, Soumya Ss, Linjie Lu, Emilie Le Maout, S Anvitha, Guillaume Salbreux, Frank Jülicher, Mandar M Inamdar, Daniel Riveline
Epithelial Colonies In Vitro Elongate through Collective Effects
eLife 10:e57730,
(Jan 4, 2021)
DOI: 10.7554/elife.57730
Benjamin Dalton, Ivo F. Sbalzarini, Itsuo Hanasaki
Fundamentals of the logarithmic measure for revealing multimodal diffusion
Biophys J, Art. No.
(Jan 2021)
DOI: 10.1016/j.bpj.2021.01.001
Karl B. Hoffmann and Ivo F. Sbalzarini
Robustness of topological defects in discrete domains
Phys. Rev. E, 103:012602
(Jan 2021)
DOI: 10.1103/PhysRevE.103.012602
2020
37 publication(s) listed
Dahmann C, Classen AK
Charting the unknown currents of cellular flows and forces
Development, 147(24):dev186403.
(Dec 21, 2020)
DOI: 10.1242/dev.186403
Vasiliki Tsata, Volker Kroehne, Daniel Wehner, Fabian Rost, Christian Lange, Cornelia Hoppe, Thomas Kurth, Susanne Reinhardt, Andreas Petzold, Andreas Dahl, Markus Loeffler, Michell M. Reimer, Michael Brand
Reactive oligodendrocyte progenitor cells (re-)myelinate the regenerating zebrafish spinal cord
Development 147(24):dev193946
(Dec 16, 2020)
DOI: 10.1242/dev.193946
Louise Jawerth, Elisabeth Fischer-Friedrich, Suropriya Saha, Jie Wang, Titus Franzmann, Xiaojie Zhang, Jenny Sachweh, Martine Ruer, Mahdiye Ijavi, Shambaditya Saha, Julia Mahamid, Anthony A. Hyman, Frank Jülicher
Protein Condensates as Aging Maxwell Fluids
Science 370(6522):1317–1323
(Dec 11, 2020)
DOI: 10.1126/science.aaw4951
André Scholich, Simon Syga, Hernán Morales-Navarrete, Fabián Segovia-Miranda, Hidenori Nonaka, Kirstin Meyer, Walter de Back, Lutz Brusch, Yannis Kalaidzidis, Marino Zerial, Frank Jülicher, Benjamin M. Friedrich
Quantification of nematic cell polarity in three-dimensional tissues
PLoS Comput Biol; 16(12): e1008412
(Dec 10, 2020)
DOI: 10.1371/journal.pcbi.1008412
Sui L, Dahmann C
Increased lateral tension is sufficient for epithelial folding in Drosophila
Development, 147(23):dev194316.
(Dec 4, 2020)
DOI: 10.1242/dev.194316
Pierre Gillotay, Meghna Shankar, Benoit Haerlingen, Sema Elif Eski, Macarena Pozo-Morales, Inés Garteizgogeascoa, Susanne Reinhardt, Annekathrin Kränkel, Juliane Bläsche, Andreas Petzold, Nikolay Ninov, Gokul Kesavan, Christian Lange, Michael Brand, Anne Lefort, Frédérick Libert, Vincent Detours, Sabine Costagliola, Singh Sumeet Pal
Single-cell transcriptome analysis reveals thyrocyte diversity in the zebrafish thyroid gland
EMBO Rep 21(12):e50612
(Dec 3, 2020)
DOI: 10.15252/embr.202050612
Gina A Monzon, Lara Scharrel, Ashwin DSouza, Verena Henrichs, Ludger Santen, Stefan Diez
Stable tug-of-war between kinesin-1 and cytoplasmic dynein upon different ATP and roadblock concentrations
J Cell Sci 133(22):jcs249938
(Nov 20, 2020)
DOI: 10.1242/jcs.249938
Aryaman Gupta, Pietro Incardona, Ata Deniz Aydin, Stefan Gumhold, Ulrik Günther, Ivo F. Sbalzarini
An Architecture for Interactive In Situ Visualization and its Transparent Implementation in OpenFPM
ISAV’20 In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization Pages 20–26
(Nov 2020)
DOI: 10.1145/3426462.3426472
Omar Adame-Arana, Christoph A. Weber, Vasily Zaburdaev, Jacques Prost, Frank Jülicher
Liquid Phase Separation Controlled by pH
Biophys J. 119(8):1590–1605
(Oct 20, 2020)
DOI: 10.1016/j.bpj.2020.07.044
Patrick Reipschlager, Tamara Flemisch, Raimund Dachselt
Personal Augmented Reality for Information Visualization on Large Interactive Displays
IEEE Transactions on Visualization and Computer Graphics, vol. 27, no. 2, pp. 1182–1192
(Oct 14, 2020)
DOI: 10.1109/TVCG.2020.3030460
Kamran Hosseini, Leon Sbosny, Ina Poser, Elisabeth Fischer-Friedrich
Binding Dynamics of α-Actinin-4 in Dependence of Actin Cortex Tension
Biophys J., 119(6):1091–1107
(Sep 15, 2020)
DOI: 10.1016/j.bpj.2020.07.031
Lorenzo Duso, Christoph Zechner
Stochastic reaction networks in dynamic compartment populations
Proc Natl Acad Sci U S A 117(37):22674–22683
(Sep 15, 2020)
DOI: 10.1073/pnas.2003734117
Ilia Zhernov, Stefan Diez, Marcus Braun, Zdenek Lansky
Intrinsically Disordered Domain of Kinesin-3 Kif14 Enables Unique Functional Diversity
Current Biology 30, 1–10
(Sep 7, 2020)
DOI: 10.1016/j.cub.2020.06.039
Ingo Nitschke, Sebastian Reuther, Axel Voigt
Liquid crystals on deformable surfaces
Proc. R. Soc. A.47620200313
(Sep 2, 2020)
DOI: 10.1098/rspa.2020.0313
Azaam Aziz, Stefano Pane, Veronica Iacovacci, Nektarios Koukourakis, Jürgen Czarske, Arianna Menciassi, Mariana Medina-Sánchez, and Oliver G. Schmidt
Medical Imaging of Microrobots: Toward In Vivo Applications
CS Nano 2020, 14, 9, 10865–10893
(Sep 1, 2020)
DOI: 10.1021/acsnano.0c05530
Kayvan Forouhesh Tehrani, Nektarios Koukourakis, Jürgen Czarske, Luke J Mortensen
In situ measurement of the isoplanatic patch for imaging through intact bone
J. Biophotonics. Accepted Author Manuscript.
(Aug 25, 2020)
DOI: 10.1002/jbio.202000160
Sebastian Reuther, Ingo Nitschke, Axel Voigt
A numerical approach for fluid deformable surfaces
Journal of Fluid Mechanics, 900, R8.
(Aug 12, 2020)
DOI: 10.1017/jfm.2020.564
Georg Krainer, Andreas Hartmann, Vadim Bogatyr, Janni Nielsen, Michael Schlierf, Daniel E. Otzen
SDS-induced multi-stage unfolding of a small globular protein through different denatured states revealed by single-molecule fluorescence
Chem. Sci. 2020, Advance Article
(Aug 10, 2020)
DOI: 10.1039/D0SC02100H
Kamran Hosseini, Anna Taubenberger, Carsten Werner, Elisabeth Fischer-Friedrich
EMT-Induced Cell-Mechanical Changes Enhance Mitotic Rounding Strength
Adv. Sci. 2020, 2001276.
(Aug 9, 2020)
DOI: 10.1002/advs.202001276
Ulrik Günther, Kyle I.S. Harrington, Raimund Dachselt, Ivo F. Sbalzarini
Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality
In Proc. BioImageComputing workshop at ECCV 2020, European Conference on Computer Vision, online.
(Aug 1, 2020)
DOI: 10.48550/arXiv.2005.00387
David Oriola, Frank Jülicher, Jan Brugués
Active forces shape the metaphase spindle through a mechanical instability
PNAS 117(28) 16154–16159
(Jul 14, 2020)
DOI: 10.1073/pnas.2002446117
Leonard Schärfen, Miloš Tišma, Michael Schlierf
Fast, simultaneous tagging and mutagenesis of genes on bacterial chromosomes
ACS Synth. Biol. 2020, 9, 8, 2203–2207
(Jul 9, 2020)
DOI: 10.1021/acssynbio.0c00202
Mohammadreza Bahadorian, Christoph Zechner, Carl D. Modes
Gift of gab: Probing the limits of dynamic concentration-sensing across a networkof communicating cells
Phys. Rev. Research 2, 023403
(Jun 25, 2020)
DOI: 10.1103/PhysRevResearch.2.023403
Verena Henrichs, Lenka Grycova, Cyril Barinka, Zuzana Nahacka, Jiri Neuzil, Stefan Diez, Jakub Rohlena, Marcus Braun, Zdenek Lansky
Mitochondria-adaptor TRAK1 promotes kinesin-1 driven transport in crowded environments
Nat Commun 11, 3123
(Jun 19, 2020)
DOI: 10.1038/s41467-020-16972-5
Marcus Braun, Stefan Diez, Zdenek Lansky
Cytoskeletal organization through multivalent interactions
J Cell Sci 133, jcs234393
(Jun 15, 2020)
DOI: 10.1242/jcs.234393
Alice Cezanne, Janelle Lauer, Anastasia Solomatina, Ivo F Sbalzarini, Marino Zerial
A non-linear system patterns Rab5 GTPase on the membrane
eLife 2020;9:e54434
(Jun 8, 2020)
DOI: 10.7554/eLife.54434
Giuseppe Antonacci, Timon Beck, Alberto Bilenca, Jürgen Czarske, Kareem Elsayad, Jochen Guck, Kyoohyun Kim, Benedikt Krug, Francesca Palombo, Robert Prevedel, Giuliano Scarcelli
Recent progress and current opinions in Brillouin microscopy for life science applications
Biophys Rev
(May 26, 2020)
DOI: 10.1007/s12551-020-00701-9
Aniruddha Mitra, Laura Meißner, Rojapriyadharshini Gandhimathi, Roman Renger, Felix Ruhnow, Stefan Diez
Kinesin-14 motors drive a right-handed helical motion of antiparallel microtubules around each other
Nat Commun 11, 2565
(May 22, 2020)
DOI: 10.1038/s41467-020-16328-z
Marcel Mokbel, Kamran Hosseini, Sebastian Aland, Elisabeth Fischer-Friedrich
The Poisson Ratio of the Cellular Actin Cortex Is Frequency Dependent
Biophys J. 118(8):1968–1976.
(Apr 21, 2020)
DOI: 10.1016/j.bpj.2020.03.002
Wolfgang Büschel, Georg Eckert, Raimund Dachselt
Challenges in Collaborative Immersive Visualization
CHI 2020 Workshop on Immersive Analytics: Envisioning Future Productivity for Immersive Analytics
(Apr 2020)
Patrick Reipschläger, Severin Engert, Raimund Dachselt
Augmented Displays: Seamlessly Extending Interactive Surfaces With Head-Mounted Augmented Reality
In Extended Abstracts of the 2020 CHI Conference on Human Factors in Computing Systems (CHI EA ’20). Association for Computing Machinery, New York, NY, USA, 1–4.
(Apr 2020)
DOI: 10.1145/3334480.3383138
Justus A. Kromer, Noelia de la Cruz, Benjamin M. Friedrich
Chemokinetic Scattering, Trapping, and Avoidance of Active Brownian Particles
Phys. Rev. Lett. 124, 118101
(Mar 17, 2020)
DOI: 10.1103/PhysRevLett.124.118101
Liyuan Sui and Christian Dahmann
Wingless counteracts epithelial folding by increasing mechanical tension at basal cell edges in Drosophila
Development 147(5) dev184713.
(Mar 11, 2020)
DOI: 10.1242/dev.184713
Marcus Michel and Christian Dahmann
Tissue mechanical properties modulate cell extrusion in the Drosophila abdominal epidermis
Development 147(5) dev179606.
(Mar 11, 2020)
DOI: 10.1242/dev.179606
Nora Molkenthin, Steffen Mühle, Antonia S. J. S. Mey, Marc Timme
Self-organized emergence of folded protein-like network structures from geometric constraints
PLoS ONE 15(2): e0229230
(Feb 27, 2020)
DOI: 10.1371/journal.pone.0229230
Georg Krainer, Mathias Schenkel, Andreas Hartmann, Dorna Ravamehr-Lake, Charles M. Deber, Michael Schlierf
CFTR transmembrane segments are impaired in their conformational adaptability by a pathogenic loop mutation and dynamically stabilized by Lumacaftor
J. Biol. Chem. 295:1985–1991
(Feb 14, 2020)
DOI: 10.1074/jbc.AC119.011360
Adam Klosin, Florian Oltsch, Tyler Harmon, Alf Honigmann, Frank Jülicher, Anthony Hyman, Christoph Zechner
Phase separation provides a mechanism to reduce noise in cells
Science 367(6476):464–468.
(Jan 24, 2020)
DOI: 10.1126/science.aav6691
2019
24 publication(s) listed
Kaushikaram Subramanian, Martin Weigert, Oliver Borsch, Heike Petzold, Alfonso Garcia-Ulloa, Eugene W Myers, Marius Ader, Irina Solovei, Moritz Kreysing
Rod nuclear architecture determines contrast transmission of the retina and behavioral sensitivity in mice
eLife 2019;8:e49542
(Dec 11, 2019)
DOI: 10.7554/eLife.49542
Hauke Drechsler, Yong Xu, Veikko F. Geyer, Yixin Zhang, Stefan Diez
Multivalent electrostatic microtubule-interactions of synthetic peptides are sufficient to mimic advanced MAP-like behaviour
Mol Biol Cell 30(24), 2953–2968
(Nov 14, 2019)
DOI: 10.1091/mbc.E19-05-0247
Oliver Beutel, Riccardo Maraspini, Karina Pombo-García, Cécilie Martin-Lemaitre, Alf Honigmann
Phase Separation of Zonula Occludens Proteins Drives Formation of Tight Junctions
Cell 179(4), 923-936.e11
(Oct 31, 2019)
DOI: 10.1016/j.cell.2019.10.011
Alexander Mietke, V. Jemseena, K. Vijay Kumar, Ivo F. Sbalzarini, Frank Jülicher
Minimal model of cellular symmetry breaking
Phys. Rev. Lett. 123, 188101
(Oct 28, 2019)
DOI: 10.1103/PhysRevLett.123.188101
Azaam Aziz, Mariana Medina-Sánchez*, Nektarios Koukourakis, Jiawei Wang, Robert Kuschmierz, Hannes Radner, Jürgen W. Czarske, Oliver G. Schmidt*
Real-Time IR Tracking of Single Reflective Micromotors through Scattering Tissues
Adv Funct Mater, 1905272
(Oct 21, 2019)
* corresponding authors
DOI: 10.1002/adfm.201905272
Aryaman Gupta, Ulrik Günther, Pietro Incardona, Ata Deniz Aydin, Raimund Dachselt, Stefan Gumhold, Ivo F. Sbalzarini
A Proposed Framework for Interactive Virtual Reality In Situ Visualization of Parallel Numerical Simulations
IEEE 9th Symposium on Large Data Analysis and Visualization (LDAV), Vancouver, BC, Canada, 2019, pp. 95–96,
(Oct 21, 2019)
DOI: 10.1109/LDAV48142.2019.8944368
Johannes Baumgart, Marcel Kirchner, Stefanie Redemann, Alec Bond, Jeffrey Woodruff, Jean-Marc Verbavatz, Frank Jülicher, Thomas Müller-Reichert, Anthony A. Hyman, Jan Brugués
Soluble tubulin is significantly enriched at mitotic centrosomes
J. Cell Biol. jcb.201902069;
(Oct 21, 2019)
DOI: 10.1083/jcb.201902069
Moritz Kreysing
Probing the Functional Role of Physical Motion in Development
Dev Cell, 51(2) 135-144
(Oct 21, 2019)
DOI: 10.1016/j.devcel.2019.10.002
Jana Sievers, Stefan Zschoche, Ron Dockhorn, Jens Friedrichs, Carsten Werner, Uwe Freudenberg
Temperature-Induced Mechanomodulation of Interpenetrating Networks of Star Poly(ethylene glycol)–Heparin and Poly(N-isopropylacrylamide)
ACS Appl. Mater. Interfaces 2019, 11, 45, 41862–41874
(Oct 7, 2019)
DOI: 10.1021/acsami.9b11719
Benedikt Krug, Nektarios Koukourakis, Juergen W. Czarske
Impulsive stimulated Brillouin microscopy for non-contact, fast mechanical investigations of hydrogels
Optics Express 27 (19), 26910–26923
(Sep 16, 2019)
DOI: 10.1364/OE.27.026910
Malte Schröder, Marc Timme
Asymmetry in repeated isotropic rotations
Phys. Rev. Research 1, 023012
(Sep 10, 2019)
DOI: 10.1103/PhysRevResearch.1.023012
Charlie Duclut, Niladri Sarkar, Jacques Prost, Frank Jülicher
Fluid pumping and active flexoelectricity can promote lumen nucleation in cell assemblies
Proc. Natl. Acad. Sci. USA, 116, 19264
(Sep 6, 2019)
DOI: 10.1073/pnas.1908481116
Axel Voigt
Fluid deformable surfaces
J. Fluid Mech. 878, 1–4
(Sep 4, 2019)
DOI: 10.1017/jfm.2019.549
Valerie Siahaan, Jochen Krattenmacher, Anthony A. Hyman, Stefan Diez, Amayra Hernández-Vega, Zdenek Lansky, Marcus Braun
Kinetically distinct phases of tau on microtubules regulate kinesin motors and severing enzymes
Nat. Cell Biol. 21, 1086–1092,
(Sep 2, 2019)
DOI: 10.1038/s41556-019-0374-6
Caren Norden, Virginie Lecaudey
Collective cell migration: general themes and new paradigms
Curr Opin Genet Dev. 57, 54–60.
(Aug 18, 2019)
DOI: 10.1016/j.gde.2019.06.013
Xiaozhu Zhang, Sarah Hallerberg, Moritz Matthiae, Dirk Witthaut, Marc Timme
Fluctuation-Induced Distributed Resonances in Oscillatory Networks
Science Adv. 5:eaav1027
(Jul 31, 2019)
DOI: 10.1126/sciadv.aav1027
Mathieu Richard, Carles Blanch-Mercader, Hajer Ennomani, Wenxiang Cao, Enrique M. De La Cruz, Jean-François Joanny, Frank Jülicher, Laurent Blanchoin, Pascal Martin
Active cargo positioning in antiparallel transport networks
PNAS 116 (30) 14835–14842
(Jul 9, 2019)
DOI: 10.1073/pnas.1900416116
Hernán Morales-Navarrete, Hidenori Nonaka, André Scholich, Fabián Segovia-Miranda, Walter de Back, Kirstin Meyer, Roman L Bogorad, Victor Koteliansky, Lutz Brusch, Yannis Kalaidzidis*, Frank Jülicher*, Benjamin M Friedrich*, Marino Zerial*
Liquid-crystal organization of liver tissue
eLife 2019;8:e44860
(Jun 17, 2019)
* corresponding authors
DOI: 10.7554/eLife.44860
Niladri Sarkar, Jacques Prost, Frank Jülicher
Field induced cell proliferation and death in a model epithelium
New J. Phys. 21 043035
(Apr 17, 2019)
DOI: 10.1088/1367-2630/ab0a8d
Hauke Haehne, Jose Casadiego, Joachim Peinke, Marc Timme
Detecting Hidden Units and Network Size from Perceptible Dynamics
Phys. Rev. Lett. 122, 158301
(Apr 16, 2019)
DOI: 10.1103/PhysRevLett.122.158301
Ingo Nitschke, Sebastian Reuther, Axel Voigt
Hydrodynamic interactions in polar liquid crystals on evolving surfaces
Phys. Rev. Fluids,
(Apr 8, 2019)
DOI: 10.1103/PhysRevFluids.4.044002
Stefan Münster, Akanksha Jain, Alexander Mietke, Anastasios Pavlopoulos, Stephan W. Grill, Pavel Tomancak
Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects
Nature,
(Mar 27, 2019)
DOI: 10.1038/s41586-019-1044-3
Uwe Freudenberg, Passant Atallah, Yanuar Dwi Putra Limasale, Carsten Werner
Charge-tuning of glycosaminoglycan-based hydrogels to program cytokine sequestration
Faraday Discuss. 219, 244–251
(Feb 22, 2019)
DOI: 10.1039/C9FD00016J
K. Venkatesan Iyer, Romina Piscitello-Gómez, Joris Paijmans, Frank Jülicher, Suzanne Eaton
Epithelial Viscoelasticity is Regulated by Mechanosensitive E-cadherin Turnover
Current Biology 29 (4), 578–591.e5,
(Feb 18, 2019)
DOI: 10.1016/j.cub.2019.01.021
2018
1 publication(s) listed
Louise M. Jawerth, Mahdiye Ijavi, Martine Ruer, Shambaditya Saha, Marcus Jahnel, Anthony A. Hyman, Frank Jülicher, Elisabeth Fischer-Friedrich
Salt-Dependent Rheology and Surface Tension of Protein Condensates Using Optical Traps
Phys. Rev. Lett. 121, 258101
(Dec 18, 2018)
DOI: 10.1103/PhysRevLett.121.258101