PoL – Physics of Life | Publications

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2025

14 publication(s) listed

Artur Czajkowski, Abhirami Udayabanu, Manthan Raj, Likhitha Ch. P. Pulibandla, Marija Tursunović, Marcus Jahnel, Ellen M. Adams
Protein modifications and ionic strength show the difference between protein-mediated and solvent-mediated regulation of biomolecular condensation
Front. Nanotechnol. 7:1556384 (Mar 5, 2025)
DOI: 10.3389/fnano.2025.1556384

Matthew R Devlin, Sangwoo Kim, Otger Campàs*, Elliot W Hawkes*
Material-like robotic collectives with spatiotemporal control of strength and shape
Science, Vol 387, Issue 6736, pp. 880-885 (Feb 21, 2025)
* co-corresponding authors
DOI: doi/10.1126/science.ads7942

Georgina A Stooke-Vaughan, Sangwoo Kim, Shuo-Ting Yen, Kevin Son, Samhita P Banavar, James Giammona, David Kimelman, Otger Campàs*
The physical roles of different posterior tissues in zebrafish axis elongation
Nat Commun 16, 1839 (Feb 21, 2025)
* corresponding author
DOI: 10.1038/s41467-025-56334-7

Thomas Brown, Ketan Mishra, Ahmed Elewa, Svetlana Iarovenko, Elaiyaraja Subramanian, Alberto Joven Araus, Andreas Petzold, Bastian Fromm, Marc R Friedländer, Lennart Rikk, Miyuki Suzuki, T Suzuki Ken-ichi, Toshinori Hayashi, Atsushi Toyoda, Catarina R Oliveira, Ekaterina Osipova, Nicholas D Leigh, Maximina H Yun, András Simon
Chromosome-scale genome assembly reveals how repeat elements shape non-coding RNA landscapes active during newt limb regeneration
Cell Genomics (Jan 27, 2025)
DOI: 10.1016/j.xgen.2025.100761

Rahul G Ramachandran, Ricard Alert, Pierre A Haas
Buckling by disordered growth
Physical Review E 110 (5), 054405 (Jan 20, 2025)
DOI: 10.1103/PhysRevE.110.054405

Mitsuhiro Matsuda, Jorge Lázaro, Miki Ebisuya
Metabolic activities are selective modulators for individual segmentation clock processes
Nature Communications volume 16, Article number: 845 (Jan 20, 2025)
DOI: 10.1038/s41467-025-56120-5

Fernando Ferreira, Sofia Moreira, Min Zhao, Elias H. Barriga
Stretch-induced endogenous electric fields drive directed collective cell migration in vivo
Nature Materials (Jan 17, 2025)
DOI: 10.1038/s41563-024-02060-2

Akanksha Bhatt, Valentin Ruffine, Uwe Töpfer, Jinhee Ryu, Elisabeth Fischer-Friedrich, Christian Dahmann
The WIRS motifs in Fat2 are required for Drosophila egg chamber rotation but not for elongation
Development, 152 (2) (Jan 17, 2025)
DOI: 10.1242/dev.204201

Alex S Holehouse, Simon Alberti
Molecular determinants of condensate composition
Molecular Cell 85 (2), 290-308 (online: Jan 16, 2025)
DOI: 10.1016/j.molcel.2024.12.021

Yitong Xu, Anna Chao, Melissa Rinaldin, Alison Kickuth, Jan Brugués, and Stefano Di Talia
The cell cycle oscillator and spindle length set the speed of chromosome separation in Drosophila embryos
Current Biology (online: Jan 2025)
DOI: 10.1016/j.cub.2024.11.046

Maik Punke, Marco Salvalaglio, Axel Voigt, Steven M Wise
A non-isothermal phase-field crystal model with lattice expansion: Analysis and benchmarks
Modelling and Simulation in Materials Science and Engineering (online: Jan 8, 2025)
DOI: 10.1088/1361-651X/ada784

César Augusto Quintana-Cataño, Ann Mukhortava, Mordjane A. Boukhet, Andreas Hartmann, Karl-Ludwig Schumann, Michael Schlierf
Magnetic tweezers to capture the fast-folding λ6-85 in slow motion
Commun Phys 8, 13 (Jan 7, 2025)
DOI: 10.1038/s42005-024-01916-y

Nadia Bihari Padhan, Axel Voigt
Suppression of hyperuniformity in hydrodynamic scalar active field theories
Journal of Physics: Condensed Matter (Jan 6, 2025)
DOI: 10.1088/1361-648X/ada243

Marko Barovic, Joke Johanna Hahn, Annett Heinrich, Trishla Adhikari, Peter Schwarz, Peter Mirtschink, Alexander Funk, Stefan Kabisch, Andreas FH Pfeiffer, Matthias Blüher, Jochen Seissler, Norbert Stefan, Robert Wagner, Andreas Fritsche, Reiner Jumpertz von Schwartzenberg, Sarantis Chlamydas, Hani Harb, Christos S Mantzoros, Triantafyllos Chavakis, Annette Schürmann, Andreas L Birkenfeld, Michael Roden, Michele Solimena, Stefan R Bornstein, Nikolaos Perakakis
Proteomic and Metabolomic Signatures in Prediabetes Progressing to Diabetes or Reversing to Normoglycemia Within 1 Year
Diabetes Care, dc241412 (Jan 2, 2025)
DOI: 10.2337/dc24-1412

2024

200 publication(s) listed

Daxiao Sun, Xueping Zhao, Tina Wiegand, Cecilie Martin-Lemaitre, Tom Borianne, Lennart Kleinschmidt, Stephan W Grill, Anthony A Hyman, Christoph Weber, Alf Honigmann
Assembly of tight junction belts by ZO1 surface condensation and local actin polymerization
Developmental Cell (online: Dec 31, 2024)
DOI: 10.1016/j.devcel.2024.12.012

Anne Grapin-Botton, Jonathan YH Loh
Editorial overview: Regaining architecture and cell cross-talk upon regeneration
Current opinion in genetics & development 91, 102302 (online: Dec 28, 2024)
DOI: 10.1016/j.gde.2024.102302

Irmela R.E.A. Trussina, Andreas Hartmann, Christine Desroches Altamirano, Janani Natarajan, Charlotte M. Fischer, Marta Aleksejczuk, Hannes Ausserwöger, Tuomas P.J. Knowles, Michael Schlierf, Titus M. Franzmann, Simon Alberti
G3BP-driven RNP granules promote inhibitory RNA-RNA interactions resolved by DDX3X to regulate mRNA translatability
Molecular Cell (online: Dec 26, 2024)
DOI: 10.1016/j.molcel.2024.11.039

Ali Al-Fatlawi, Md Ballal Hossen, Stella de Paula Lopes, A Francis Stewart, Michael Schroeder
A structural phylogenetic tree of Rad52 and its annealase superfamily
Computational and Structural Biotechnology Journal (Dec 24, 2024)
DOI: 10.1016/j.csbj.2024.12.012

Joan Antoni Soler, Anupam Singh, Marino Zerial, Shashi Thutupalli
Motor Function of the Two-Component EEA1-Rab5 Revealed by dcFCCS
Molecular Motors: Methods and Protocols, 87-115 (online: Dec 21, 2024)
DOI: 10.1007/978-1-0716-4280-1_4

Kinga Zolnacz, Ronja Stephan, Jakob Dremel, Katharina Hausmann, Matthias Ließmann, Michael Steinke, Juergen Czarske, Robert Kuschmierz
Multicore fiber with thermally expanded cores for increased collection efficiency in endoscopic imaging
Light: Advanced Manufacturing 5 (4), 580-587 (Dec 19, 2024)
DOI: 10.37188/lam.2024.049

Burton K Lim, Martin Pippel, Thomas Brown, Sylke Winkler, Myrtani Pieri, Meike Mai, Eugene W Myers, Emma C Teeling, Sonja C Vernes, Bat1K consortium
The genome sequence of the greater two-lined sac-winged bat Saccopteryx bilineata, Temminck, 1838 (Emballonuridae, Emballonurinae)
Wellcome Open Research 9, 726 (Dec 18, 2024)
DOI: 10.12688/wellcomeopenres.22972.1

Dominik Sturm, Suryanarayana Maddu, Ivo F Sbalzarini
Learning locally dominant force balances in active particle systems
Proceedings A 480 (2304), 20230532 (Dec 18, 2024)
DOI: 10.1098/rspa.2023.0532

Tina Subic, Ivo F Sbalzarini
Loss of bimolecular reactions in reaction–diffusion master equations is consistent with diffusion limited reaction kinetics in the mean field limit
The Journal of Chemical Physics 161 (23) (Dec 16, 2024)
DOI: 10.1063/5.0227527

Ekaterina Vorobevskaia, Céline Loot, Didier Mazel, Michael Schlierf
The recombination efficiency of the bacterial integron depends on the mechanical stability of the synaptic complex
Sci. Adv. 10(50):eadp8756 (Dec 13, 2024)
DOI: 10.1126/sciadv.adp8756

Mansi Gupta, Thomas Kurth, Fabian Heinemann, Petra Schwille, Sebastian Keil, Franziska Knopf, and Michael Brand
Fine-tuning of Fgf8 morphogen gradient by heparan sulfate proteoglycans in the extracellular matrix
Biophysical Journal (Dec 11, 2024)
DOI: 10.1016/j.bpj.2024.12.009

Anna Hadarovich, Hari Raj Singh, Soumyadeep Ghosh, Maxim Scheremetjew, Nadia Rostam, Anthony A Hyman, Agnes Toth-Petroczy
PICNIC accurately predicts condensate-forming proteins regardless of their structural disorder across organisms
Nature Communications 15 (1), 1-16 (Dec 11, 2024)
DOI: 10.1038/s41467-024-55089-x

Ian Seim, Stephan W Grill
Empirical methods that provide physical descriptions of dynamic cellular processes
Biophysical Journal (Dec 5, 2024)
DOI: 10.1016/j.bpj.2024.12.003

Tina Wiegand, Jinghui Liu, Lutz Vogeley, Isabel LuValle-Burke, Jan Geisler, Anatol W Fritsch, Anthony A Hyman, Stephan W Grill
Actin polymerization counteracts prewetting of N-WASP on supported lipid bilayers
PNAS 121 (50), e2407497121 (Dec 4, 2024)
DOI: 10.1073/pnas.2407497121

Wolfgang Büschel, Katja Krug, Marc Satkowski, Stefan Gumhold, Raimund Dachselt
A Research Platform for Studying Mixed-Presence Collaboration
2024 IEEE International Symposium on Mixed and Augmented Reality Adjunct (ISMAR-Adjunct) (online: Dec 2, 2024)
DOI: 10.1109/ISMAR-Adjunct64951.2024.00058

Timon Beck, Lize-Mari van der Linden, Wade M Borcherds, Kyoohyun Kim, Raimund Schlüßler, Paul Müller, Titus M Franzmann, Conrad Möckel, Ruchi Goswami, Mark Leaver, Tanja Mittag, Simon Alberti, Jochen Guck
Optical characterization of molecular interaction strength in protein condensates
Molecular Biology of the Cell 35 (12), ar154 (online: Dec 2, 2024)
DOI: 10.1091/mbc.E24-03-0128

Chi Fung Willis Chow, Agnes Toth-Petroczy
The evolution and exploration of intrinsically disordered and phase-separated protein states
The Three Functional States of Proteins, 353-379 (Nov 22, 2024)
DOI: 10.1016/B978-0-443-21809-5.00014-4

Stefan Rothe, Fabio A Barbosa, Jürgen W Czarske, Filipe M Ferreira
Unlocking mode programming with multi-plane light conversion using computer-generated hologram optimisation
Journal of Physics: Photonics 7 (1), 015002 (Nov 22, 2024)
DOI: 10.1088/2515-7647/ad9209

Maarten P Bebelman, Lenka Belicova, Elzbieta Gralinska, Tobias Jumel, Aparajita Lahree, Sarah Sommer, Andrej Shevchenko, Timofei Zatsepin, Yannis Kalaidzidis, Martin Vingron, Marino Zerial
Hepatocyte differentiation requires anisotropic expansion of bile canaliculi
Development 151 (22) (Nov 21, 2024)
DOI: 10.1242/dev.202777

D Janka Bauer, Arash Nikoubashman
The conformations of protein chains at the interface of biomolecular condensates
Nature Communications 15 (1), 9975 (Nov 19, 2024)
DOI: 10.1038/s41467-024-53575-w

A Sophie Brumm, Afshan McCarthy, Claudia Gerri, Todd Fallesen, Laura Woods, Riley McMahon, Athanasios Papathanasiou, Kay Elder, Phil Snell, Leila Christie, Patricia Garcia, Valerie Shaikly, Mohamed Taranissi, Paul Serhal, Rabi A Odia, Mina Vasilic, Anna Osnato, Peter J Rugg-Gunn, Ludovic Vallier, Caroline S Hill, Kathy K Niakan
Initiation and maintenance of the pluripotent epiblast in pre-implantation human development is independent of NODAL signaling
Developmental Cell (Nov 18, 2024)
DOI: 10.1016/j.devcel.2024.10.020

Mehrez Gammoudi, Isabel L Dittmann, Johannes Girstmair, Pavel Tomancak, Bernhard Egger, Verónica N Bulnes
A new Phrikoceros species (Polycladida: Cotylea) from Ghar El Melh lagoon (Tunisia) with some remarks on the morphology of the genera Phrikoceros and Thytthosoceros
Biologia, 1-15 (Nov 18, 2024)
DOI: 10.1007/s11756-024-01818-y

Merlin Lange, Alejandro Granados, Shruthi VijayKumar, Jordão Bragantini, Sarah Ancheta, Yang-Joon Kim, Sreejith Santhosh, Michael Borja, Hirofumi Kobayashi, Erin McGeever, Ahmet Can Solak, Bin Yang, Xiang Zhao, Yang Liu, Angela M Detweiler, Sheryl Paul, Ilan Theodoro, Honey Mekonen, Chris Charlton, Tiger Lao, Rachel Banks, Sheng Xiao, Adrian Jacobo, Keir Balla, Kyle Awayan, Samuel D’Souza, Robert Haase, Alexandre Dizeux, Olivier Pourquie, Rafael Gómez-Sjöberg, Greg Huber, Mattia Serra, Norma Neff, Angela Oliveira Pisco, Loïc A Royer
A multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors
Cell 187 (23) (Nov 14, 2024)
DOI: 10.1016/j.cell.2024.09.047

Wentao Zheng, Yuxuan Wang, Jie Cui, Guangyao Guo, Yufeng Li, Jin Hou, Qiang Tu, Yulong Yin, Francis Stewart, Youming Zhang, Xiaoying Bian, Xue Wang
ReaL-MGE is a tool for enhanced multiplex genome engineering and application to malonyl-CoA anabolism
Nature Communications 15 (1), 9790 (Nov 12, 2024)
DOI: 10.1038/s41467-024-54191-4

Jiahui Wang, Dinesh Sundaravadivelu Devarajan, Keerthivasan Muthukumar, Young C. Kim, Arash Nikoubashman, Jeetain Mittal
Sequence-dependent conformational transitions of disordered proteins
Chemical Science (Nov 12, 2024)
DOI: 10.1039/D4SC05004E

K. Yanín Guerra Santillán, Caroline Jantzen, Christian Dahmann, Elisabeth Fischer-Friedrich
Epithelial folding through local degradation of an elastic basement membrane plate
Advanced Physics Research, 2400062 (Nov 11, 2024)
DOI: 10.1002/apxr.202400062

M Sreepadmanabh, Meenakshi Ganesh, Pratibha Sanjenbam, Christina Kurzthaler, Deepa Agashe & Tapomoy Bhattacharjee
Cell shape affects bacterial colony growth under physical confinement
Nat Commun 15, 9561 (Nov 8, 2024)
DOI: 10.1038/s41467-024-53989-6

Johannes Pahlke, Ivo F Sbalzarini
Proven Distributed Memory Parallelization of Particle Methods
ACM Transactions on Parallel Computing 11 (4), 1-45 (Nov 8, 2024)
DOI: 10.1145/3696189

Prannoy Seth, Jens Friedrichs, Yanuar Dwi Putra Limasale, Nicole Fertala, Uwe Freudenberg, Yixin Zhang, Ayala Lampel, Carsten Werner
Interpenetrating Polymer Network Hydrogels with Tunable Viscoelasticity and Proteolytic Cleavability to Direct Stem Cells In Vitro
Advanced Healthcare Materials, 2402656 (Nov 6, 2024)
DOI: 10.1002/adhm.202402656

Abhimanyu Sharma, Benjamin M Friedrich, Veikko F Geyer
Active fluctuations of axoneme oscillations scale with number of dynein motors
PNAS 121 (46) e2406244121 (Nov 5, 2024)
DOI: 10.1073/pnas.2406244121

Sudarshana Laha, Jonathan Bauermann, Frank Jülicher, Thomas C. T. Michaels, Christoph A. Weber
Chemical reactions regulated by phase-separated condensates
Phys. Rev. Research 6, 043092 (Nov 4, 2024)
DOI: 10.1103/PhysRevResearch.6.043092

Nadiia Davydiuk, Vaidehi Londhe, Manfred F Maitz, Carsten Werner, Andreas Fery, Quinn A Besford
The interaction of glycogen nanoparticles with human blood
Nanoscale 17 (1), 252-260 (Nov 4, 2024)
DOI: 10.1039/D4NR03034F

Clemens Bilsing, Uwe Janoske, Jürgen Czarske, Lars Büttner, Sebastian Burgmann
3D-3C measurements of flow reversal in small sessile drops in shear flow
International Journal of Multiphase Flow 182, 105017 (Nov 3, 2024)
DOI: 10.1016/j.ijmultiphaseflow.2024.105017

Juliane Hammer, Paul Röppenack, Sarah Yousuf, Anja Machate, Marika Fischer, Stefan Hans, and Michael Brand
Blind But Alive – Congenital Loss of atoh7 Disrupts the Visual System of Adult Zebrafish
Investigative Ophthalmology & Visual Science (Nov 1, 2024)
DOI: 10.1167/iovs.65.13.42

Mariana Maia-Gil, Maria Gorjão, Roman Belousov, Jaime A. Espina, João Coelho, Juliette Gouhier, Ana P. Ramos, Elias H. Barriga, Anna Erzberger, and Caren Norden
Nuclear deformability facilitates apical nuclear migration in the developing zebrafish retina
Current Biology (Oct 30, 2024)
DOI: 10.1016/j.cub.2024.10.015

Georg Börner, Malte Schröder, Moritz Thümler, Marc Timme
Perturbation-response dynamics of coupled nonlinear systems
Chaos: An Interdisciplinary Journal of Nonlinear Science 34 (10) (Oct 29, 2024)
DOI: 10.1063/5.0223294

Christine Desroches Altamirano, Simon Alberti
Surviving the heat: the role of macromolecular assemblies in promoting cellular shutdown
Trends in Biochemical Sciences (online: Oct 28, 2024)
DOI: 10.1016/j.tibs.2024.09.008

Yonit Maroudas-Sacks, Liora Garion, S Suganthan, Marko Popović, Kinneret Keren
Confinement Modulates Axial Patterning in Regenerating Hydra
PRX Life 2 (4), 043007 (Oct 28, 2024)
DOI: 10.1103/PRXLife.2.043007

Julia Duque, Alessandra Bonfanti, Jonathan Fouchard, Lucia Baldauf, Sara R. Azenha, Emma Ferber, Andrew Harris, Elias H. Barriga, Alexandre J. Kabla, Guillaume Charras
Rupture strength of living cell monolayers
Nature Materials volume 23, pages 1563–1574 (Oct 28, 2024)
DOI: 10.1038/s41563-024-02027-3

Whendy Contreras, Jody Groenendyk, Marc Gentzel, Pascal Y Schönberg, Frank Buchholz, Marek Michalak, Bernd Schröder, Torben Mentrup
Selective regulation of aspartyl intramembrane protease activity by calnexin
Cellular and Molecular Life Sciences 81 (1), 441 (Oct 26, 2024)
DOI: 10.1007/s00018-024-05478-8

Dominica Cao, Sumit Garai, James DiFrisco, Jesse V Veenvliet
The logic of monsters: development and morphological diversity in stem-cell-based embryo models
Interface Focus 14 (5) (Oct 25, 2024)
DOI: 10.1098/rsfs.2024.0023

Sebastian Kühn, Valentina Magno, Ralf Zimmermann, Yanuar Dwi Putra Limasale, Passant Atallah, Aukha Stoppa, Max J Männel, Julian Thiele, Jens Friedrichs, Uwe Freudenberg, Carsten Werner
Microgels With Electrostatically Controlled Molecular Affinity to Direct Morphogenesis
Advanced Materials, 2409731 (Oct 24, 2024)
DOI: 10.1002/adma.202409731

Andreas Müller, Nikolai Klena, Song Pang, Leticia Elizabeth Galicia Garcia, Oleksandra Topcheva, Solange Aurrecoechea Duran, Davud Sulaymankhil, Monika Seliskar, Hassan Mziaut, Eyke Schöniger, Daniela Friedland, Nicole Kipke, Susanne Kretschmar, Carla Münster, Jürgen Weitz, Marius Distler, Thomas Kurth, Deborah Schmidt, Harald F Hess, C Shan Xu, Gaia Pigino, Michele Solimena
Structure, interaction and nervous connectivity of beta cell primary cilia
Nature Communications 15 (1), 9168 (Oct 24, 2024)
DOI: 10.1038/s41467-024-53348-5

Xueping Zhao, Susanne Liese, Alf Honigmann, Frank Jülicher, Christoph A Weber
Theory of wetting dynamics with surface binding
New J. Phys. 26 103025 (Oct 23, 2024)
DOI: 10.1088/1367-2630/ad80bb

Benjamin R Sabari, Anthony A Hyman, Denes Hnisz
Functional specificity in biomolecular condensates revealed by genetic complementation
Nature Reviews Genetics, 1-12 (Oct 21, 2024)
DOI: 10.1038/s41576-024-00780-4

Francois El-Daher, Stephen J Enos, Louisa K Drake, Daniel Wehner, Markus Westphal, Nicola J Porter, Catherina G Becker, Thomas Becker
Microglia are essential for tissue contraction in wound closure after brain injury in zebrafish larvae
Life Science Alliance 8 (1) e202403052; (online: Oct 17, 2024)
DOI: 10.26508/lsa.202403052

Maik Porrmann, Axel Voigt
Shape evolution of fluid deformable surfaces under active geometric forces
Physics of Fluids 36, 102120 (Oct 16, 2024)
DOI: 10.1063/5.0233955

Romy Kronstein-Wiedemann, Jessica Thiel, Duran Sürün, Madeleine Teichert, Stephan R Künzel, Stefan Zimmermann, Lisa Wagenführ, Frank Buchholz, Torsten Tonn
Characterization of immortalized bone marrow erythroid progenitor adult (imBMEP-A)—The first inducible immortalized red blood cell progenitor cell line derived from bone marrow CD71-positive cells
Cytotherapy 26 (11), 1362-1373 (Oct 11, 2024)
DOI: 10.1016/j.jcyt.2024.06.009

Tianfang Lin, Zhongyuan Yu, Matthew McGinity, Stefan Gumhold
An immersive labeling method for large point clouds
Computers & Graphics 124, 104101 (Oct 11, 2024)
DOI: 10.1016/j.cag.2024.104101

Alexandra Schauer, Jesse V. Veenvliet
Retinoid-enhanced human gastruloids
Nat Cell Biol 26, 1634–1636 (Oct 10, 2024)
DOI: 10.1038/s41556-024-01517-5

Leila Haj Abdullah Alieh, Beatriz Cardoso de Toledo, Anna Hadarovich, Agnes Toth-Petroczy, Federico Calegari
Characterization of alternative splicing during mammalian brain development reveals the extent of isoform diversity and potential effects on protein structural changes
Biology Open 13 (10) (Oct 10, 2024)
DOI: 10.1242/bio.061721

Yanuar Dwi Putra Limasale, Maximilian Fusenig, Marten Samulowitz, Passant Atallah, Jana Sievers, Nicholas Dennison, Uwe Freudenberg, Jens Friedrichs, Carsten Werner
Glycosaminoglycan Concentration and Sulfation Patterns of Biohybrid Polymer Matrices Direct Microvascular Network Formation and Stability
Advanced Functional Materials 34 (49), 2411475 (Oct 10, 2024)
DOI: 10.1002/adfm.202411475

U Sandy Tretbar, Joel G Rurik, Even H Rustad, Duran Sürün, Ulrike Köhl, Johanna Olweus, Frank Buchholz, Zoltán Ivics, Stephan Fricke, Ulrich Blache
Non-viral vectors for chimeric antigen receptor immunotherapy
Nature Reviews Methods Primers 4 (1), 74 (Oct 10, 2024)
DOI: 10.1038/s43586-024-00348-w

Chi Fung Willis Chow, Soumyadeep Ghosh, Anna Hadarovich, Agnes Toth-Petroczy
SHARK enables sensitive detection of evolutionary homologs and functional analogs in unalignable and disordered sequences
Proc Natl Acad Sci USA 121(42):e2401622121 (Oct 9, 2024)
DOI: 10.1073/pnas.2401622121

Shanshan Xu, Maria E Gierisch, Enrica Barchi, Ina Poser, Simon Alberti, Florian A Salomons, Nico P Dantuma
Chemical inhibition of the integrated stress response impairs the ubiquitin-proteasome system
Communications Biology 7 (1), 1282 (Oct 8, 2024)
DOI: 10.1038/s42003-024-06974-0

Elias H. Barriga
Following the electric current
Nat Rev Mol Cell Biol 25, 844 (Oct 4, 2024)
DOI: 10.1038/s41580-024-00781-5

Takashi Nishio, Helmut Schiessel
Coalescence of liquid or gel-like DNA-encapsulating microdroplets
J. Chem. Phys. 161, 134904 (Oct 2, 2024)
DOI: 10.1063/5.0223951

Sami Tasmany, Daniel Kaiser, Jakob Woisetschläger, Johannes Gürtler, Robert Kuschmierz, Jürgen Czarske
Heterodyne background-oriented schlieren for the measurement of thermoacoustic oscillations in flames
Experiments in Fluids 65 (10), 151 (Oct 1, 2024)
DOI: 10.1007/s00348-024-03890-1

Tomáš Takáč, Lenka Kuběnová, Olga Šamajová, Petr Dvořák, Jan Řehák, Jan Haberland, Sebastian T Bundschuh, Tibor Pechan, Pavel Tomančák, Miroslav Ovečka, Jozef Šamaj
Actin cytoskeleton and plasma membrane aquaporins are involved in different drought response of Arabidopsis rhd2 and der1 root hair mutants
Plant Physiology and Biochemistry 216, 109137 (Oct 1, 2024)
DOI: 10.1016/j.plaphy.2024.109137

Heidi L. van de Wouw, Shuo-Ting Yen, Manon Valet, Joseph A. Garcia, Carlos O. Gomez, Antoine Vian, Yucen Liu, Jennifer Pollock, Petr Pospíšil, Otger Campàs*, Ellen M. Sletten*
Non-Ionic Fluorosurfactants for Droplet-Based in vivo Applications
Angew. Chem. Int. Ed., e202404956 (Sep 27, 2024)
* co-corresponding authors
DOI: 10.1002/anie.202404956

Boyi Wang, Frank Jülicher, Patrick Pietzonka
Condensate formation in a chiral lattice gas
New J. Phys. 26 093031 (Sep 24, 2024)
DOI: 10.1088/1367-2630/ad7490

Lukas Haugk, Holger Merlitz, Jens-Uwe Sommer
Single Chain Polymer Condensates under External Force
Macromolecules Vol 57/Issue 19 (Sep 24, 2024)
DOI: 10.1021/acs.macromol.4c01060

Metin G. Davutoglu, Veikko F. Geyer, Lukas Niese, Johannes R. Soltwedel, Marcelo L. Zoccoler, Valeria Sabatino, Robert Haase, Nils Kröger, Stefan Diez, Nicole Poulsen
Gliding motility of the diatom Craspedostauros australis coincides with the intracellular movement of raphid-specific myosins
Commun Biol 7, 1187 (Sep 23, 2024)
DOI: 10.1038/s42003-024-06889-w

Cheng-Wu Li, Holger Merlitz, Jens-Uwe Sommer
Comparison of different thermostat settings in the implicit solvent approach for nanoparticles through brush-decorated nanopores
Physical Review E 110 (3), 034503 (Sep 23, 2024)
DOI: 10.1103/PhysRevE.110.034503

Christine Desroches Altamirano, Simon Alberti
Protocol to reconstitute translationally arrested heat shock mRNPs and condensates in vitro
STAR protocols 5 (3), 103275 (Sep 20, 2024)
DOI: 10.1016/j.xpro.2024.103275

Rahul M Sarate, Joel Hochstetter, Manon Valet, Adrien Hallou, Yura Song, Nordin Bansaccal, Melanie Ligare, Mariaceleste Aragona, Dan Engelman, Anaïs Bauduin, Otger Campàs*, Benjamin D Simons*, Cedric Blanpain*
Dynamic regulation of tissue fluidity controls skin repair during wound healing
Cell 187(19):5298–5315.e19 (Sep 19, 2024)
* co-corresponding authors
DOI: 10.1016/j.cell.2024.07.031

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Langmuir 40 (5), 2487-2499 (Jan 5, 2024)
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Laura K. Wiley, Jonathan A. Shortt, Emily R. Roberts, Jan Lowery, Elizabeth Kudron, Meng Lin, David Mayer, Melissa Wilson, Tonya M. Brunetti, Sameer Chavan, Tzu L. Phang, Nikita Pozdeyev, Joseph Lesny, Stephen J. Wicks, Ethan T. Moore, Joshua L. Morgenstern, Alanna N. Roff, Elise L. Shalowitz, Adrian Stewart, Cole Williams, Michelle N. Edelmann, Madelyne Hull, J. Tacker Patton, Lisen Axell, Lisa Ku, Yee Ming Lee, Jean Jirikowic, Anna Tanaka, Emily Todd, Sarah White, Brett Peterson, Emily Hearst, Richard Zane, Casey S. Greene, Rasika Mathias, Marilyn Coors, Matthew Taylor, Debashis Ghosh, Michael G. Kahn, Ian M. Brooks, Christina L. Aquilante, David Kao, Nicholas Rafaels, Kristy R. Crooks, Steve Hess, Kathleen C. Barnes, Christopher R. Gignoux
Building a vertically integrated genomic learning health system: The biobank at the Colorado Center for Personalized Medicine
The American Journal of Human Genetics 111(1):11–23 (Jan 4, 2024)
DOI: 10.1016/j.ajhg.2023.12.001

Jiawei Sun, Bin Yang, Nektarios Koukourakis, Jochen Guck, Juergen W. Czarske
AI-driven projection tomography with multicore fibre-optic cell rotation
Nat Commun 15(1), 147 (Jan 2, 2024)
DOI: 10.1038/s41467-023-44280-1

Marek Uvizl, Sebastien J Puechmaille, Sarahjane Power, Martin Pippel, Samuel Carthy, Wilfried Haerty, Eugene W Myers, Emma C Teeling, Zixia Huang
Comparative genome microsynteny illuminates the fast evolution of nuclear mitochondrial segments (NUMTs) in mammals
Molecular biology and evolution 41 (1), msad278 (Jan 2024)
DOI: 10.1093/molbev/msad278

2023

249 publication(s) listed

Dennis Pohle, Fabio A. Barbosa, Filipe M. Ferreira, Stefan Rothe, Juergen W Czarske
Digital few-mode fiber multiplexer using multiplane light conversion
2023 IEEE Photonics Conference (IPC) (Dec 25, 2023)
DOI: 10.1109/ipc57732.2023.10360545

Qian Zhang, Yuan Sui, Stefan Rothe, Jürgen Czarske
Physics-informed mode decomposition neural network for structured light in multimode fibers
2023 IEEE Photonics Conference (IPC) (Dec 25, 2023)
DOI: 10.1109/ipc57732.2023.10360643

T.‐Y. Dora Tang, Xin Huang
Artificial Cells: From Basic Assembly to Directed Functionality
Small Methods 7(12) (Dec 23, 2023)
DOI: 10.1002/smtd.202301446

Elena Bachini, Veit Krause, Ingo Nitschke, Axel Voigt
Derivation and simulation of a two-phase fluid deformable surface model
Journal of Fluid Mechanics 977:A41 (Dec 21, 2023)
DOI: 10.1017/jfm.2023.943

Romina Piscitello-Gómez, Franz S Gruber, Abhijeet Krishna, Charlie Duclut, Carl D Modes, Marko Popović, Frank Jülicher, Natalie A Dye, Suzanne Eaton
Core PCP mutations affect short-time mechanical properties but not tissue morphogenesis in the Drosophila pupal wing
eLife 12:e85581 (Dec 20, 2023)
DOI: 10.7554/eLife.85581

Piotr Surówka, Anton Souslov, Frank Jülicher, Debarghya Banerjee
Odd Cosserat Elasticity in Active Materials
Phys. Rev. E 108, 064609 (Dec 15, 2023)
DOI: 10.1103/PhysRevE.108.064609

Abhinav Singh, Ivo F. Sbalzarini, Anas Obeidat
Entropically damped artificial compressibility for the discretization corrected particle strength exchange method in incompressible fluid mechanics
Computers & Fluids 267, 106074 (Dec 15, 2023)
DOI: 10.1016/j.compfluid.2023.106074

Katarzyna P. Adamala, Marileen Dogterom, Yuval Elani, Petra Schwille, Masahiro Takinoue, T-Y Dora Tang
Present and future of synthetic cell development
Nat Rev Mol Cell Biol 25(3):162–167 (Dec 15, 2023)
DOI: 10.1038/s41580-023-00686-9

Jonathan Bauermann, Giacomo Bartolucci, Job Boekhoven, Christoph A. Weber, Frank Jülicher
Formation of Liquid Shells in Active Droplet systems
Phys. Rev. Research 5, 043246 (Dec 14, 2023)
DOI: 10.1103/PhysRevResearch.5.043246

Adrian Pascal Nievergelt, Dennis Ray Diener, Aliona Bogdanova, Thomas Brown, Gaia Pigino
Protocol for precision editing of endogenous Chlamydomonas reinhardtii genes with CRISPR-Cas
STAR Protocols 5(1):102774 (Dec 13, 2023)
DOI: 10.1016/j.xpro.2023.102774

Dennis Pohle, Fabio A. Barbosa, Filipe M. Ferreira, Stefan Rothe, Juergen W Czarske
Smart few-mode fiber multiplexer using multiplane light conversion
Frontiers in Optics + Laser Science 2023 (FiO, LS) (Dec 11, 2023)
DOI: 10.1364/fio.2023.fm1c.3

Qian Zhang, Yuan Sui, Stefan Rothe, Jürgen W. Czarske
Learning to demultiplex the superposition of spatial modes in multimode fiber using physics-informed deep learning
Frontiers in Optics + Laser Science 2023 (FiO, LS) (Dec 11, 2023)
DOI: 10.1364/fio.2023.ftu1d.3

Tommaso Bianucci, Christoph Zechner
A local polynomial moment approximation for compartmentalized biochemical systems
Math Biosci 367:109110 (Dec 8, 2023)
DOI: 10.1016/j.mbs.2023.109110

Xavier Trepat, Ricard Alert
How to bridge the gap between theory and experiments in biological physics
Nat. Phys. 19(12):1738–1739 (Dec 8, 2023)
DOI: 10.1038/s41567-023-02276-0

Lars Büttner, Zeyu Gao, Ping Yang, Clemens Bilsing, Jürgen Czarske
Distortion Correction for Imaging Using a Wavefront Sensing Based Multiple-Input Deep Neural Network
Optica Imaging Congress (3D, COSI, DH, FLatOptics, IS, pcAOP) (Nov 29, 2023)
DOI: 10.1364/cosi.2023.ctu3b.4

Elias Scharf, Ronja Stephan, Kinga Zolnacz, Michael Steinke, Robert Kuschmierz, Juergen Czarske
Lensless Single-Shot Endoscopy with Needle-Thin Multicore Fiber Bundles enabled by 2PP 3D Printing on the Fiber Tip
Optica Imaging Congress (3D, COSI, DH, FLatOptics, IS, pcAOP) (Nov 29, 2023)
DOI: 10.1364/isa.2023.im3e.2

Josefine Metzkes-Ng, Florian-Emanuel Brack, Florian Kroll, Constantin Bernert, Stefan Bock, Elisabeth Bodenstein, Michael Brand, Thomas E. Cowan, René Gebhardt, Stefan Hans, Uwe Helbig, Felix Horst, Jeannette Jansen, Stephan D. Kraft, Mechthild Krause, Elisabeth Leßmann, Steffen Löck, Jörg Pawelke, Thomas Püschel, Marvin Reimold, Martin Rehwald, Christian Richter, Hans-Peter Schlenvoigt, Ulrich Schramm, Michael Schürer, Joao Seco, Emília Rita Szabó, Marvin E. P. Umlandt, Karl Zeil, Tim Ziegler, Elke Beyreuther
The DRESDEN PLATFORM is a research hub for ultra-high dose rate radiobiology
Sci Rep 13(1):20611 (Nov 23, 2023)
DOI: 10.1038/s41598-023-46873-8

Joseph L. Watson, Estere Seinkmane, Christine T. Styles, Andrei Mihut, Lara K. Krüger, Kerrie E. McNally, Vicente Jose Planelles-Herrero, Michal Dudek, Patrick M. McCall, Silvia Barbiero, Michael Vanden Oever, Sew Yeu Peak-Chew, Benjamin T. Porebski, Aiwei Zeng, Nina M. Rzechorzek, David C. S. Wong, Andrew D. Beale, Alessandra Stangherlin, Margot Riggi, Janet Iwasa, Jörg Morf, Christos Miliotis, Alina Guna, Alison J. Inglis, Jan Brugués, Rebecca M. Voorhees, Joseph E. Chambers, Qing-Jun Meng, John S. O’Neill, Rachel S. Edgar, Emmanuel Derivery
Macromolecular condensation buffers intracellular water potential
Nature 623, 842–852 (Nov 23, 2023)
DOI: 10.1038/s41586-023-06626-z

Massimo Mancone, Aldo J. Vázquez Mézquita, Lucia Ilaria Birtolo, Pal Maurovich-Horvat, Klaus F. Kofoed, Theodora Benedek, Patrick Donnelly, Jose Rodriguez-Palomares, Andrejs Erglis, Cyril Štěchovský, Gintare Šakalytė, Nada Čemerlić Ađić, Matthias Gutberlet, Ignacio Diez, Gershan Davis, Elke Zimmermann, Cezary Kępka, Radosav Vidakovic, Marco Francone, Małgorzata Ilnicka-Suckiel, Fabian Plank, Juhanni Knuuti, Rita Faria, Stephen Schröder, Colin Berry, Luca Saba, Balazs Ruzsics, Nina Rieckmann, Christine Kubiak, Kristian Schultz Hansen, Jaqueline Müller-Nordhorn, Bela Merkely, Per E. Sigvardsen, Imre Benedek, Clare Orr, Filipa Xavier Valente, Ligita Zvaigzne, Vojtěch Suchánek, Antanas Jankauskas, Filip Ađić, Michael Woinke, Stephen Keane, Ignacio Lecumberri, Erica Thwaite, Mariusz Kruk, Vladimir Jovanovic, Donata Kuśmierz, Gudren Feuchtner, Mikko Pietilä, Vasco Gama Ribeiro, Tanja Drosch, Christian Delles, Vitanio Palmisano, Michael Fisher, Zsófia D. Drobni, Charlotte Kragelund, Rosca Aurelian, Stephanie Kelly, Bruno Garcia del Blanco, Ainhoa Rubio, Melinda Boussoussou, Jens D. Hove, Ioana Rodean, Susan Regan, Hug Cuéllar Calabria, Dávid Becker, Linnea Larsen, Roxana Hodas, Adriane E. Napp, Robert Haase, Sarah Feger, Mahmoud Mohamed, Konrad Neumann, Henryk Dreger, Matthias Rief, Viktoria Wieske, Pamela S. Douglas, Melanie Estrella, Maria Bosserdt, Peter Martus, Lina M. Serna-Higuita, Jonathan D. Dodd, Marc Dewey
Impact of smoking in patients with suspected coronary artery disease in the randomised DISCHARGE trial
Eur Radiol 34(6):4127–4141 (Nov 22, 2023)
DOI: 10.1007/s00330-023-10355-2

Laura Celotto, Fabian Rost, Anja Machate, Juliane Bläsche, Andreas Dahl, Anke Weber, Stefan Hans, Michael Brand
Single-cell RNA sequencing unravels the transcriptional network underlying zebrafish retina regeneration
eLife 12:RP86507 (Nov 21, 2023)
DOI: 10.7554/eLife.86507.3

Ashwin I. D’Souza, Rahul Grover, Gina A. Monzon, Ludger Santen, Stefan Diez
Vesicles driven by dynein and kinesin exhibit directional reversals without regulators
Nat Commun 14, 7532 (Nov 20, 2023)
DOI: 10.1038/s41467-023-42605-8

Qinghao Yu, Hannah E Walters, Giovanni Pasquini, Sumeet Pal Singh, Martina Lachnit, Catarina R Oliveira, Daniel León-Periñán, Andreas Petzold, Preethi Kesavan, Cristina Subiran Adrados, Ines Garteizgogeascoa, Dunja Knapp, Anne Wagner, Andrea Bernardos, María Alfonso, Gayathri Nadar, Alwin M Graf, Konstantin E Troyanovskiy, Andreas Dahl, Volker Busskamp, Ramón Martínez-Máñez, Maximina H Yun
Cellular senescence promotes progenitor cell expansion during axolotl limb regeneration
Dev Cell 58(22):2416-2427.e7 (Nov 20, 2023)
DOI: 10.1016/j.devcel.2023.09.009

Lucas Woltmann, Jonas Deepe, Claudio Hartmann, Wolfgang Lehner
evalPM: a framework for evaluating machine learning models for particulate matter prediction
Environ Monit Assess 195(12), 1491 (Nov 18, 2023)
DOI: 10.1007/s10661-023-11996-y

Archit Bhatnagar, Michael Nestler, Peter Gross, Mirna Kramar, Mark Leaver, Axel Voigt, Stephan W. Grill
Axis convergence in C. elegans embryos
Current Biology 33, 1–13 (Nov 17, 2023)
DOI: 10.1016/j.cub.2023.10.050

David T Gonzales, Milena Schuhmacher, H Mathilda Lennartz, Juan M Iglesias-Artola, Sascha M Kuhn, Pavel Barahtjan, Christoph Zechner, André Nadler
Quantifying single-cell diacylglycerol signaling kinetics after uncaging
Biophysical journal 122 (24), 4699-4709 (online: Nov 16, 2023)
DOI: 10.1016/j.bpj.2023.11.013

Zehua Dou, Laura Tropf, Harry Hoster, Hagen Schmidt, Juergen Czarske, David Weik
Advanced Ultrasonic Diagnostic Technology Towards Green Hydrogen Energy Systems
2023 IEEE International Ultrasonics Symposium (IUS) (Nov 7, 2023)
DOI: 10.1109/ius51837.2023.10307141

Lukas Theo Schmitt, Aksana Schneider, Jonas Posorski, Felix Lansing, Milica Jelicic, Manavi Jain, Shady Sayed, Frank Buchholz, Duran Sürün
Quantification of evolved DNA-editing enzymes at scale with DEQSeq
Genome Biol 24(1), 254 (Nov 6, 2023)
DOI: 10.1186/s13059-023-03097-3

Mengfei Gao, Dishi Wang, Michaela Wilsch‐Bräuninger, Weihua Leng, Jonathan Schulte, Nina Morgner, Dietmar Appelhans, T‐Y. Dora Tang
Cell Free Expression in Proteinosomes Prepared from Native Protein‐PNIPAAm Conjugates
Macromolecular Bioscience 24(3) (Nov 5, 2023)
DOI: 10.1002/mabi.202300464

Zehua Dou, Bowen Fang, Laura Tropf, Harry Hoster, Hagen Schmidt, Jürgen Czarske, David Weik
A Water Monitoring System for Proton Exchange Membrane Fuel Cells Based on Ultrasonic Lamb Waves: An Ex Situ Proof of Concept
IEEE Trans. Instrum. Meas. 72:1–12 (Nov 3, 2023)
DOI: 10.1109/tim.2023.3329101

Antoine Vian, Marie Pochitaloff, Shuo-Ting Yen, Sangwoo Kim, Jennifer Pollock, Yucen Liu, Ellen M. Sletten, Otger Campàs*
In situ quantification of osmotic pressure within living embryonic tissues
Nat Commun 14(1), 7023 (Nov 2, 2023)
* corresponding author
DOI: 10.1038/s41467-023-42024-9

Aboutaleb Amiri, Charlie Duclut, Frank Jülicher, Marko Popović
Random Traction Yielding Transition in Epithelial Tissues
Phys. Rev. Lett. 131, 188401 (Oct 30, 2023)
DOI: 10.1103/PhysRevLett.131.188401

Max Korn, Julián Méndez, Sascha Klüppelholz, Ricardo Langner, Christel Baier, Raimund Dachselt
PMC-VIS: An Interactive Visualization Tool for Probabilistic Model Checking
Lecture Notes in Computer Science 361–375 (Oct 30, 2023)
DOI: 10.1007/978-3-031-47115-5_20

Zheng Shen, Daxiao Sun, Adriana Savastano, Sára Joana Varga, Maria-Sol Cima-Omori, Stefan Becker, Alf Honigmann, Markus Zweckstetter
Multivalent Tau/PSD-95 interactions arrest in vitro condensates and clusters mimicking the postsynaptic density
Nat Commun 14(1), 6839 (Oct 27, 2023)
DOI: 10.1038/s41467-023-42295-2

Dennis Schifferl, Manuela Scholze-Wittler, Alba Villaronga Luque, Milena Pustet, Lars Wittler, Jesse V. Veenvliet, Frederic Koch, Bernhard G. Herrmann
Genome-wide identification of notochord enhancers comprising the regulatory landscape of the brachyury locus in mouse
Development 150(22) (Oct 26, 2023)
DOI: 10.1242/dev.202111

Cheng-Wu Li, Holger Merlitz, Jens-Uwe Sommer
Scaling Behaviors of Nanoparticle Clusters That Are Driven through Brush-Decorated Nanopores
Macromolecules 56(21):8710–8720 (Oct 25, 2023)
DOI: 10.1021/acs.macromol.3c01762

Shivraj B. Kotkar, Michael P. Howard, Arash Nikoubashman, Jacinta C. Conrad, Ryan Poling-Skutvik, Jeremy C. Palmer
Confined Dynamics in Spherical Polymer Brushes
ACS Macro Lett. 12(11):1503–1509 (Oct 25, 2023)
DOI: 10.1021/acsmacrolett.3c00505

Elisabeth Knust
Der Crumbs-Komplex – von Epithelpolarität zu retinaler Degeneration
Biospektrum 29(6):574–577 (Oct 19, 2023)
DOI: 10.1007/s12268-023-2038-0

Ashley T. Sendell-Price, Frank J. Tulenko, Mats Pettersson, Du Kang, Margo Montandon, Sylke Winkler, Kathleen Kulb, Gavin P. Naylor, Adam Phillippy, Olivier Fedrigo, Jacquelyn Mountcastle, Jennifer R. Balacco, Amalia Dutra, Rebecca E. Dale, Bettina Haase, Erich D. Jarvis, Gene Myers, Shawn M. Burgess, Peter D. Currie, Leif Andersson, Manfred Schartl
Low mutation rate in epaulette sharks is consistent with a slow rate of evolution in sharks
Nat Commun 14(1), 6628 (Oct 19, 2023)
DOI: 10.1038/s41467-023-42238-x

Jiahui Wang, Dinesh Sundaravadivelu Devarajan, Arash Nikoubashman, Jeetain Mittal
Conformational Properties of Polymers at Droplet Interfaces as Model Systems for Disordered Proteins
ACS Macro Letters, Vol 12/Issue 11 (Oct 19, 2023)
DOI: 10.1021/acsmacrolett.3c00456

Nils Kröger, Marc Gentzel
Wie man ein Glashaus baut: die außergewöhnlichen Proteine der Kieselalgen
Biospektrum 29, 621–624 (Oct 19, 2023)
DOI: 10.1007/s12268-023-2031-7

Tom Glosemeyer, Julian Lich, Robert Kuschmierz, Jürgen Czarske
Diffuser-based fiber endoscopy for single-shot 3D fluorescence imaging
EPJ Web Conf. 287:03013 (Oct 18, 2023)
DOI: 10.1051/epjconf/202328703013

Cassie L. Kemmler, Jana Smolikova, Hannah R. Moran, Brandon J. Mannion, Dunja Knapp, Fabian Lim, Anna Czarkwiani, Viviana Hermosilla Aguayo, Vincent Rapp, Olivia E. Fitch, Seraina Bötschi, Licia Selleri, Emma Farley, Ingo Braasch, Maximina Yun, Axel Visel, Marco Osterwalder, Christian Mosimann, Zbynek Kozmik, Alexa Burger
Conserved enhancers control notochord expression of vertebrate Brachyury
Nat Commun 14(1):6594 (Oct 18, 2023)
DOI: 10.1038/s41467-023-42151-3

Alexander M. Bergmann, Jonathan Bauermann, Giacomo Bartolucci, Carsten Donau, Michele Stasi, Anna-Lena Holtmannspötter, Frank Jülicher, Christoph A. Weber, Job Boekhoven
Liquid spherical shells are a non-equilibrium steady state of active droplets
Nat Commun 14(1), 6552 (Oct 17, 2023)
DOI: 10.1038/s41467-023-42344-w

Andreas Hartmann, Koushik Sreenivasa, Mathias Schenkel, Neharika Chamachi, Philipp Schake, Georg Krainer, Michael Schlierf
An automated single-molecule FRET platform for high-content, multiwell plate screening of biomolecular conformations and dynamics
Nat Commun 14, 6511 (Oct 16, 2023)
DOI: 10.1038/s41467-023-42232-3

Mahmoud Mohamed, Maria Bosserdt, Viktoria Wieske, Benjamin Dubourg, Hatem Alkadhi, Mario J. Garcia, Sebastian Leschka, Elke Zimmermann, Abbas A. Shabestari, Bjarne L. Nørgaard, Matthijs F. L. Meijs, Kristian A. Øvrehus, Axel C. P. Diederichsen, Juhani Knuuti, Bjørn A. Halvorsen, Vladymir Mendoza-Rodriguez, Yung-Liang Wan, Nuno Bettencourt, Eugenio Martuscelli, Ronny R. Buechel, Hans Mickley, Kai Sun, Simone Muraglia, Philipp A. Kaufmann, Bernhard A. Herzog, Jean-Claude Tardif, Georg M. Schütz, Michael Laule, David E. Newby, Stephan Achenbach, Matthew Budoff, Robert Haase, Federico Biavati, Aldo Vásquez Mézquita, Peter Schlattmann, Marc Dewey
Combination of computed tomography angiography with coronary artery calcium score for improved diagnosis of coronary artery disease: a collaborative meta-analysis of stable chest pain patients referred for invasive coronary angiography
Eur Radiol 34(4):2426–2436 (Oct 13, 2023)
DOI: 10.1007/s00330-023-10223-z

Ping Liu, Nils Schumann, Fabian Abele, Fazheng Ren, Marcel Hanke, Yang Xin, Andreas Hartmann, Michael Schlierf, Adrian Keller, Weilin Lin*, Yixin Zhang*
Thermophoretic Analysis of Biomolecules across the Nanoscales in Self-Assembled Polymeric Matrices
ACS Appl. Nano Mater (Oct 10, 2023)
* corresponding authors
DOI: 10.1021/acsanm.3c03623

Andreas Geyer, Johannes Pietrzyk, Alexander Krause, Dirk Habich, Wolfgang Lehner, Christian Färber, Thomas Willhalm
Near to Far: An Evaluation of Disaggregated Memory for In-Memory Data Processing
Proceedings of the 1st Workshop on Disruptive Memory Systems (Oct 10, 2023)
DOI: 10.1145/3609308.3625271

Qian Zhang, Yuan Sui, Dennis Pohle, Nektarios Koukourakis, Jürgen W. Czarske, Stefan Rothe
Reference-less phase retrieval of multimode fibers using a deep neural network
Emerging Topics in Artificial Intelligence (ETAI) 2023 (Oct 5, 2023)
DOI: 10.1117/12.2674072

Jiawei Sun, Nektarios Koukourakis, Juergen W. Czarske
3D cell rotation in multicore fiber-based optical diffraction tomography with isotropic resolution using deep learning
Optical Trapping and Optical Micromanipulation XX (Oct 5, 2023)
DOI: 10.1117/12.2676123

Rohit Krishnan Harish, Mansi Gupta, Daniela Zöller, Hella Hartmann, Ali Gheisari, Anja Machate, Stefan Hans, Michael Brand
Real-time monitoring of an endogenous Fgf8a gradient attests to its role as a morphogen during zebrafish gastrulation
Development 150(19):dev201559 (Oct 3, 2023)
DOI: 10.1242/dev.201559

Clemens Bilsing, Lars Büttner, Sebastian Burgmann, Jürgen W. Czarske
High-speed 3D particle tracking with dynamic aberration correction using a Fresnel guide star
Unconventional Imaging, Sensing, and Adaptive Optics 2023 (Oct 3, 2023)
DOI: 10.1117/12.2675483

Abhinav Singh, Philipp H. Suhrcke, Pietro Incardona, Ivo F. Sbalzarini
A numerical solver for active hydrodynamics in three dimensions and its application to active turbulence
Physics of Fluids 35(10):105155 (Oct 1, 2023)
DOI: 10.1063/5.0169546

Thomas Pinetz, Erich Kobler, Robert Haase, Katerina Deike-Hofmann, Alexander Radbruch, Alexander Effland
Faithful Synthesis of Low-Dose Contrast-Enhanced Brain MRI Scans Using Noise-Preserving Conditional GANs
Lecture Notes in Computer Science 607–617 (Sep 30, 2023)
DOI: 10.1007/978-3-031-43895-0_57

Fang-Chu Lin, Heidi L. van de Wouw, Otger Campàs, Ellen M. Sletten, Jeffrey I. Zink*
Synthesis of Fluorous Ferrofluids and Effects of the Nanoparticle Coatings on Field- and Temperature-Dependent Magnetizations
Chem. Mater. 35(19):7957–7966 (Sep 29, 2023)
* corresponding author
DOI: 10.1021/acs.chemmater.3c01172

Katharina Schmidt, Ning Guo, Wenjie Wang, Juergen W. Czarske, Nektarios Koukourakis
Chromatic aberration correction using reinforcement learning
Emerging Topics in Artificial Intelligence (ETAI) 2023 (Sep 28, 2023)
DOI: 10.1117/12.2675887

Tijue Wang, Jakob Dremel, Jiachen Wu, Ortrud Uckermann, Roberta Galli, Ilker Eyüpoglu, Jürgen W. Czarske, Robert Kuschmierz
Learning-based lensless fiber bundle imaging with real-time resolution enhancement for biomedicine
Emerging Topics in Artificial Intelligence (ETAI) 2023 (Sep 28, 2023)
DOI: 10.1117/12.2675989

Nektarios Koukourakis, Jiawei Sun, Jürgen W. Czarske
Optical diffraction tomography based on AI-driven adaptive optical cell-rotation
Emerging Topics in Artificial Intelligence (ETAI) 2023 (Sep 28, 2023)
DOI: 10.1117/12.2678217

Guoming Gao, Emily S. Sumrall, Sethuramasundaram Pitchiaya, Markus Bitzer, Simon Alberti, Nils G. Walter
Biomolecular condensates in kidney physiology and disease
Nat Rev Nephrol 19(12):756–770 (Sep 26, 2023)
DOI: 10.1038/s41581-023-00767-0

Arvid Sandforth, Reiner Jumpertz von Schwartzenberg, Elsa Vazquez Arreola, Robert L Hanson, Gencer Sancar, Sarah Katzenstein, Karl Lange, Hubert Preißl, Simon I Dreher, Cora Weigert, Robert Wagner, Kostantinos Kantartzis, Jürgen Machann, Fritz Schick, Rainer Lehmann, Andreas Peter, Nikoletta Katsouli, Vasilis Ntziachristos, Corinna Dannecker, Louise Fritsche, Nikolaos Perakakis, Martin Heni, Peter Paul Nawroth, Stefan Kopf, Andreas F H Pfeiffer, Stefan Kabisch, Michael Stumvoll, Peter E H Schwarz, Hans Hauner, Andreas Lechner, Jochen Seissler, Iryna Yurchenko, Andrea Icks, Michele Solimena, Hans-Ulrich Häring, Julia Szendroedi, Annette Schürmann, Martin Hrabé de Angelis, Matthias Blüher, Michael Roden, Stefan R Bornstein, Norbert Stefan, Andreas Fritsche, Andreas L Birkenfeld
Mechanisms of weight loss-induced remission in people with prediabetes: a post-hoc analysis of the randomised, controlled, multicentre Prediabetes Lifestyle Intervention Study (PLIS)
The Lancet Diabetes & Endocrinology 11(11):798–810 (Sep 25, 2023)
DOI: 10.1016/s2213-8587(23)00235-8

Meghali Aich, Asgar Hussain Ansari, Li Ding, Vytautas Iesmantavicius, Deepanjan Paul, Chunaram Choudhary, Souvik Maiti, Frank Buchholz, Debojyoti Chakraborty
TOBF1 modulates mouse embryonic stem cell fate through regulating alternative splicing of pluripotency genes
Cell Reports 42(10):113177 (Sep 25, 2023)
DOI: 10.1016/j.celrep.2023.113177

Jaime A. Espina, Marilia H. Cordeiro, Milan Milivojevic, Ivana Pajić-Lijaković, Elias H. Barriga
Response of cells and tissues to shear stress
Journal of Cell Science 136(18) (Sep 25, 2023)
DOI: 10.1242/jcs.260985

Jay Gopalakrishnan, Kerstin Feistel, Benjamin M Friedrich, Anne Grapin‐Botton, Nathalie Jurisch‐Yaksi, Elvira Mass, David U Mick, Roman‐Ulrich Müller, Helen May‐Simera, Bernhard Schermer, Miriam Schmidts, Peter Walentek, Dagmar Wachten
Emerging principles of primary cilia dynamics in controlling tissue organization and function
The EMBO Journal 42(21) (Sep 25, 2023)
DOI: 10.15252/embj.2023113891

Tina Helmecke, Ilka I. Rose, Mikhail V. Tsurkan, Hannah Roth, Manfred F. Maitz, Carsten Werner, Matthias Wessling
Poly(styrene-alt-maleic anhydride)-copolymers blended in poly(ether sulfone) membranes as a platform for effective biomolecular surface functionalization
Journal of Membrane Science 689:122050 (Sep 23, 2023)
DOI: 10.1016/j.memsci.2023.122050

Felix Kramer, Carl D. Modes
Ensnarled: Topological linkage of spatially embedded network pairs
Phys. Rev. Research 5(3), 033203 (Sep 22, 2023)
DOI: 10.1103/physrevresearch.5.033203

Ali Tahaei, Giulio Biroli, Misaki Ozawa, Marko Popović, Matthieu Wyart
Scaling Description of Dynamical Heterogeneity and Avalanches of Relaxation in Glass-Forming Liquids
Phys. Rev. X 13(3), 031034 (Sep 21, 2023)
DOI: 10.1103/physrevx.13.031034

Marcel Hanke, Daniel Dornbusch, Emilia Tomm, Guido Grundmeier, Karim Fahmy, Adrian Keller
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Nikolai Klena, Giovanni Maltinti, Umut Batman, Gaia Pigino, Paul Guichard, Virginie Hamel
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Julius Gonsior, Christian Falkenberg, Silvio Magino, Anja Reusch, Claudio Hartmann, Maik Thiele, Wolfgang Lehner
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Adrian Pascal Nievergelt, Dennis Ray Diener, Aliona Bogdanova, Thomas Brown, Gaia Pigino
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Alexa Sadier, Neal Anthwal, Andrew L. Krause, Renaud Dessalles, Michael Lake, Laurent A. Bentolila, Robert Haase, Natalie A. Nieves, Sharlene E. Santana, Karen E. Sears
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Nils Christian Lehnen, Arndt-Hendrik Schievelkamp, Christian Gronemann, Robert Haase, Inga Krause, Max Gansen, Tobias Fleckenstein, Franziska Dorn, Alexander Radbruch, Daniel Paech
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Belin Selcen Beydag-Tasöz, Joyson Verner D’Costa, Lena Hersemann, Byung Ho Lee, Federica Luppino, Yung Hae Kim, Christoph Zechner, Anne Grapin-Botton
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Julian Lich, Tino Wollmann, Robert Kuschmierz, Maik Gude, Jürgen Czarske
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Mauricio Rocha-Martins, Elisa Nerli, Jenny Kretzschmar, Martin Weigert, Jaroslav Icha, Eugene W. Myers, Caren Norden
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Abhinav Singh, Alejandra Foggia, Pietro Incardona, Ivo F. Sbalzarini
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Yu-Hsuan Peng, Syuan-Ku Hsiao, Krishna Gupta, André Ruland, Günter K. Auernhammer, Manfred F. Maitz, Susanne Boye, Johanna Lattner, Claudia Gerri, Alf Honigmann, Carsten Werner, Elisha Krieg
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Felix Schmieder, Lars Büttner, Wouter Derks, Olaf Bergmann, Jürgen W. Czarske
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Jirina Zackova Suchanova, Gust Bilcke, Beata Romanowska, Ali Fatlawi, Martin Pippel, Alastair Skeffington, Michael Schroeder, Wim Vyverman, Klaas Vandepoele, Nils Kröger, Nicole Poulsen
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Ryota Takaki, Louise Jawerth, Marko Popović, Frank Jülicher
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Anja Reusch, Wolfgang Lehner
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Sachin Krishnan Thekke Veettil, Gentian Zavalani, Uwe Hernandez Acosta, Ivo F. Sbalzarini, Michael Hecht
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Ruben Lier, Charlie Duclut, Stefano Bo, Jay Armas, Frank Jülicher, Piotr Surówka
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Carlotta Mayer, Sophie Nehring, Michael Kücken, Urska Repnik, Sarah Seifert, Aleksandra Sljukic, Julien Delpierre, Hernán Morales‐Navarrete, Sebastian Hinz, Mario Brosch, Brian Chung, Tom Karlsen, Meritxell Huch, Yannis Kalaidzidis, Lutz Brusch, Jochen Hampe, Clemens Schafmayer, Marino Zerial
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Nikolaos Perakakis, Hani Harb, Benjamin G Hale, Zsuzsanna Varga, Charlotte Steenblock, Waldemar Kanczkowski, Vasileia Ismini Alexaki, Barbara Ludwig, Peter Mirtschink, Michele Solimena, Nicole Toepfner, Sebastian Zeissig, Manuel Gado, Irene Alma Abela, Felix Beuschlein, Giatgen A Spinas, Claudia Cavelti-Weder, Philipp A Gerber, Michael Huber, Alexandra Trkola, Milo A Puhan, Wendy Wei-Lynn Wong, Andreas Linkermann, Viswanathan Mohan, Hendrik Lehnert, Peter Nawroth, Triantafyllos Chavakis, Geltrude Mingrone, Christian Wolfrum, Annelies S Zinkernagel, Stefan R Bornstein
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Juliane Valtin, Stephan Behrens, André Ruland, Florian Schmieder, Frank Sonntag, Lars D. Renner, Manfred F. Maitz, Carsten Werner
A New In Vitro Blood Flow Model for the Realistic Evaluation of Antimicrobial Surfaces
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Stefan Rothe, David Krause, Qian Zhang, Dennis Pohle, Nektarios Koukourakis, Jürgen W. Czarske
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Anastasia Shatilovich, Vamshidhar R. Gade, Martin Pippel, Tarja T. Hoffmeyer, Alexei V. Tchesunov, Lewis Stevens, Sylke Winkler, Graham M. Hughes, Sofia Traikov, Michael Hiller, Elizaveta Rivkina, Philipp H. Schiffer, Eugene W. Myers, Teymuras V. Kurzchalia
A novel nematode species from the Siberian permafrost shares adaptive mechanisms for cryptobiotic survival with C. elegans dauer larva
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Daniel Martin Klotz, Franziska Maria Schwarz, Anna Dubrovska, Kati Schuster, Mirko Theis, Alexander Krüger, Oliver Kutz, Theresa Link, Pauline Wimberger, Stephan Drukewitz, Frank Buchholz, Jürgen Thomale, Jan Dominik Kuhlmann
Establishment and Molecular Characterization of an In Vitro Model for PARPi-Resistant Ovarian Cancer
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Alexandra Parichenko, Wonyeong Choi, Seonghwan Shin, Marlena Schlecht, Rafael Gutierrez, Teuku Fawzul Akbar, Carsten Werner, Jeong‐Soo Lee, Bergoi Ibarlucea, Gianaurelio Cuniberti
Hydrogel‐Gated Silicon Nanotransistors for SARS‐CoV‐2 Antigen Detection in Physiological Ionic Strength
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Georg Börner, Hauke Haehne, Jose Casadiego, Marc Timme
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Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Mark Blaxter, Nova Mieszkowska, Neil Hall, Peter Holland, Richard Durbin, Thomas Richards, Paul Kersey, Peter Hollingsworth, Willie Wilson, Alex Twyford, Ester Gaya, Mara Lawniczak, Owen Lewis, Gavin Broad, Fergal Martin, Michelle Hart, Ian Barnes, Giulio Formenti, Linelle Abueg, James Torrance, Eugene W. Myers, Richard Durbin, Mark Blaxter, Shane A. McCarthy
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
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David T. Gonzales, Surased Suraritdechachai, Christoph Zechner, T.‐Y. Dora Tang
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Dirk Habich, Alexander Krause, Johannes Pietrzyk, Christian Faerber, Wolfgang Lehner
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Claudia Sperling, Manfred F. Maitz, Vincent Körber, Stefanie Hänsel, Carsten Werner
Advanced in vitro hemocompatibility assessment of biomaterials using a new flow incubation system
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Tohid Siddiqui, Mehmet Ilyas Cosacak, Stanislava Popova, Prabesh Bhattarai, Elanur Yilmaz, Annie J. Lee, Yuhao Min, Xue Wang, Mariet Allen, Özkan İş, Zeynep Tansu Atasavum, Natalia Rodriguez-Muela, Badri N. Vardarajan, Delaney Flaherty, Andrew F. Teich, Ismael Santa-Maria, Uwe Freudenberg, Carsten Werner, Giuseppe Tosto, Richard Mayeux, Nilüfer Ertekin-Taner, Caghan Kizil
Nerve growth factor receptor (Ngfr) induces neurogenic plasticity by suppressing reactive astroglial Lcn2/Slc22a17 signaling in Alzheimer’s disease
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Nicole Poulsen, Nils Kröger
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Sarah Perez, Suryanarayana Maddu, Ivo F. Sbalzarini, Philippe Poncet
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Caren Norden
A Fish Eye View: Retinal Morphogenesis from Optic Cup to Neuronal Lamination
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Jorge Lázaro, Maria Costanzo, Marina Sanaki-Matsumiya, Charles Girardot, Masafumi Hayashi, Katsuhiko Hayashi, Sebastian Diecke, Thomas B Hildebrandt, Giovanna Lazzari, Jun Wu, Stoyan Petkov, Rüdiger Behr, Vikas Trivedi*, Mitsuhiro Matsuda*, Miki Ebisuya*
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Dhawal Choudhary, Laura Mediani, Mario J. Avellaneda, Sveinn Bjarnason, Simon Alberti, Edgar E. Boczek, Pétur O. Heidarsson, Alessandro Mossa, Serena Carra, Sander J. Tans, Ciro Cecconi
Human Small Heat Shock Protein B8 Inhibits Protein Aggregation without Affecting the Native Folding Process
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M. Residori, S. Praetorius, P. de Anna, A. Voigt
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Qian Zhang, Sujay Charania, Stefan Rothe, Nektarios Koukourakis, Niels Neumann, Dirk Plettemeier, Juergen W. Czarske
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Felix Meyer, Benjamin Hernandez, Richard Pausch, René Widera, David Groß, Sergei Bastrakov, Axel Huebl, Guido Juckeland, Jeffrey Kelling, Matt Leinhauser, David Rogers, Ulrich Schramm, Klaus Steiniger, Stefan Gumhold, Jeff Young, Michael Bussmann, Sunita Chandrasekaran, Alexander Debus
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Abhinav Singh, Quentin Vagne, Frank Jülicher, Ivo F. Sbalzarini
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Jens Friedrichs, Ralf Helbig, Julia Hilsenbeck, Prithvi Raj Pandey, Jens-Uwe Sommer, Lars David Renner, Tilo Pompe, Carsten Werner
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Harish P Jain, Axel Voigt, Luiza Angheluta
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Kristian Kyle Le Vay, Elia Salibi, Basusree Ghosh, TY Dora Tang, Hannes Mutschler
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Aryaman Gupta, Ulrik Günther, Pietro Incardona, Guido Reina, Steffen Frey, Stefan Gumhold, Ivo F. Sbalzarini
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Mehdi Moghaddamfar, Christian Färber, Wolfgang Lehner, Akash Kumar
KeRRaS: Sort-Based Database Query Processing on Wide Tables Using FPGAs
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Valentina Magno, Carsten Werner
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David T Gonzales, Surased Suraritdechachai, T -Y Dora Tang
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Miguel A. Ruiz-Fresneda, Sebastian Schaefer, René Hübner, Karim Fahmy, Mohamed L. Merroun
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Anna M. Dowbaj, Timo N. Kohler, Lucía Cordero-Espinoza, Florian Hollfelder, Meritxell Huch
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Moritz Thümler, Marc Timme
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Baldwin Nsonga, Jordi Ventosa-Molina, Denis Koschichow, Jochen Fröhlich, Stefan Gumhold, Gerik Scheuermann
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Jan S. Schuhmacher, Susanne tom Dieck, Savvas Christoforidis, Cedric Landerer, Jimena Davila Gallesio, Lena Hersemann, Sarah Seifert, Ramona Schäfer, Angelika Giner, Agnes Toth-Petroczy, Yannis Kalaidzidis, Katherine E. Bohnsack, Markus T. Bohnsack, Erin M. Schuman, Marino Zerial
The Rab5 effector FERRY links early endosomes with mRNA localization
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Dennis Quentin, Jan S. Schuhmacher, Björn U. Klink, Jeni Lauer, Tanvir R. Shaikh, Pim J. Huis in’t Veld, Luisa M. Welp, Henning Urlaub, Marino Zerial, Stefan Raunser
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Ana Patricia Ramos, Alicja Szalapak, Lucrezia Camilla Ferme, Carl D. Modes
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Giulia Pierini, Christian Dahmann
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Meiying Cui, Dzung Nguyen, Michelle Patino Gaillez, Stephan Heiden, Weilin Lin, Michael Thompson, Francesco V. Reddavide, Qinchang Chen, Yixin Zhang
Trio-pharmacophore DNA-encoded chemical library for simultaneous selection of fragments and linkers
Nature communications. 14 (1) (Mar 17, 2023)
DOI: 10.1038/s41467-023-37071-1

Robert Kuschmierz, Elias Scharf, Jakob Dremel, Kinga Zolnacz, Ronja Stephan, Michael Steinke, Detlef Ristau, Jürgen W. Czarske
3D micro-endoscopy enabled by 2-photon polymerization and advanced fiber design (Conference Presentation)
Adaptive Optics and Wavefront Control for Biological Systems IX (Mar 16, 2023)
DOI: 10.1117/12.2651436

Jiawei Sun, Nektarios Koukourakis, Juergen Czarske
Image quality enhancement for ultra-thin lensless multi-core fiber phase endoscopes
Quantitative Phase Imaging IX (Mar 16, 2023)
DOI: 10.1117/12.2651444

Jürgen W. Czarske, Nektarios Koukourakis, Stefan Rothe, Felix Wagner, Mike O. Karl
Investigation of neurodegeneration in the human organoid retina with transmission matrix measurements (Conference Presentation)
Adaptive Optics and Wavefront Control for Biological Systems IX (Mar 16, 2023)
DOI: 10.1117/12.2661936

Tom Glosemeyer, Julian Lich, Robert Kuschmierz, Jürgen W. Czarske
Step-by-step transfer function reversal for single-shot 3D fiber endoscopy using a diffuser
Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXX (Mar 15, 2023)
DOI: 10.1117/12.2650292

Nektarios Koukourakis, Leon Liebig, Jürgen W. Czarske
Impulsive stimulated Brillouin microscopy for high-speed biomedical diagnostics (Conference Presentation)
Optical Elastography and Tissue Biomechanics X (Mar 15, 2023)
DOI: 10.1117/12.2651776

Felix Horst, Michael Brand, Stefan Hans, Leonhard Karsch, Elisabeth Lessmann, Steffen Löck, Michael Schürer, Jörg Pawelke, Elke Beyreuther
In Regard to Böhlen et al.
Int J Radiat Oncol Biol Phys (Mar 15, 2023)
DOI: 10.1016/j.ijrobp.2022.11.015

Jovan Mircetic, Aylin Camgöz, Moustafa Abohawya, Li Ding, Julia Dietzel, Sebastián García Tobar, Maciej Paszkowski‐Rogacz, Therese Seidlitz, Tim Schmäche, Marie‐Christin Mehnert, Olga Sidorova, Jürgen Weitz, Frank Buchholz, Daniel E. Stange
CRISPR/Cas9 Screen in Gastric Cancer Patient‐Derived Organoids Reveals KDM1A‐NDRG1 Axis as a Targetable Vulnerability
Small Methods 7(6) (Mar 13, 2023)
DOI: 10.1002/smtd.202201605

J. Méndez, C. Alrabbaa, P. Koopmann, R. Langner, F. Baader, R. Dachselt
Evonne: A Visual Tool for Explaining Reasoning with OWL Ontologies and Supporting Interactive Debugging
Computer Graphics Forum 42(6) (Mar 13, 2023)
DOI: 10.1111/cgf.14730

Johannes Pahlke, Ivo F. Sbalzarini
A Unifying Mathematical Definition of Particle Methods
IEEE Open Journal of the Computer Society ( Volume: 4) (Mar 8, 2023)
DOI: 10.1109/OJCS.2023.3254466

Louisa K. Drake, Marcus Keatinge, Themistoklis M. Tsarouchas, Catherina G. Becker, David A. Lyons, Thomas Becker
Rapid Testing of Gene Function in Axonal Regeneration After Spinal Cord Injury Using Larval Zebrafish
Methods in Molecular Biology 263–277 (Mar 7, 2023)
DOI: 10.1007/978-1-0716-3012-9_15

Nino Lauber, Ondrej Tichacek, Rudrarup Bose, Christoph Flamm, Luca Leuzzi, T-Y Dora Tang, Kepa Ruiz-Mirazo, Daniele De Martino
Statistical mechanics of biomolecular condensates via cavity methods
iScience 26(4):106300 (Mar 6, 2023)
DOI: 10.1016/j.isci.2023.106300

Ronja Stephan, Elias Scharf, Kinga Zolnacz, Katharina Hausmann, Matthias Ließmann, Lea Kötters, Detlev Ristau, Jürgen W. Czarske, Robert Kuschmierz, Michael Steinke
Aperiodic multi-core fibers for lens-less endoscopy
Optical Fibers and Sensors for Medical Diagnostics, Treatment and Environmental Applications XXIII (Mar 6, 2023)
DOI: 10.1117/12.2648872

Xinren Yu, Adele Doyle
Molecular Circuit Discovery for Mechanobiology of Cardiovascular Disease
Regen. Eng. Transl. Med. 9(1):108–124 (Mar 2023)
DOI: 10.1007/s40883-022-00264-z

Helmut Schiessel
Spatial and Temporal Organization of Chromatin at Small and Large Scales
Annu. Rev. Condens. Matter Phys. 14(1):193–210 (Mar 1, 2023)
DOI: 10.1146/annurev-conmatphys-040821-115729

Macià Esteve Pallarès, Irina Pi-Jaumà, Isabela Corina Fortunato, Valeria Grazu, Manuel Gómez-González, Pere Roca-Cusachs, Jesus M. de la Fuente, Ricard Alert, Raimon Sunyer, Jaume Casademunt, Xavier Trepat
Stiffness-dependent active wetting enables optimal collective cell durotaxis
Nat. Phys. 19, 279–289 (Feb 2023)
DOI: 10.1038/s41567-022-01835-1

Jana Oertel, Susanne Sachs, Katrin Flemming, Muhammad Hassan Obeid, Karim Fahmy
Distinct Effects of Chemical Toxicity and Radioactivity on Metabolic Heat of Cultured Cells Revealed by “Isotope-Editing”
Microorganisms 11(3):584 (Feb 27, 2023)
DOI: 10.3390/microorganisms11030584

Jana Sievers, Vaibhav Mahajan, Petra B. Welzel, Carsten Werner, Anna Taubenberger
Precision Hydrogels for the Study of Cancer Cell Mechanobiology
Adv Healthcare Materials 12(14) (Feb 24, 2023)
DOI: 10.1002/adhm.202202514

Deolinda Silva, Lucas Schirmer, Tiffany S. Pinho, Passant Atallah, Jorge R. Cibrão, Rui Lima, João Afonso, Sandra B‐Antunes, Cláudia R. Marques, João Dourado, Uwe Freudenberg, Rui A. Sousa, Carsten Werner, António J. Salgado
Sustained Release of Human Adipose Tissue Stem Cell Secretome from Star‐Shaped Poly(ethylene glycol) Glycosaminoglycan Hydrogels Promotes Motor Improvements after Complete Transection in Spinal Cord Injury Rat Model
Adv Healthcare Materials 12(17) (Feb 24, 2023)
DOI: 10.1002/adhm.202202803

Robert Haase, Thomas Pinetz, Erich Kobler, Daniel Paech, Alexander Effland, Alexander Radbruch, Katerina Deike-Hofmann
Artificial Contrast
Invest Radiol 58(8):539–547 (Feb 24, 2023)
DOI: 10.1097/rli.0000000000000963

Jing Wang, Marcus Michel, Lisa Bialas, Giulia Pierini, Christian Dahmann
Preferential recruitment and stabilization of Myosin II at compartment boundaries in Drosophila
J Cell Sci 136 (5): jcs260447. (Feb 24, 2023)
DOI: 10.1242/jcs.260447

Kosti Tapio, Charlotte Kielar, Johannes M. Parikka, Adrian Keller, Heini Järvinen, Karim Fahmy, J. Jussi Toppari
Large-Scale Formation of DNA Origami Lattices on Silicon
Chem. Mater. 35(5):1961–1971 (Feb 23, 2023)
DOI: 10.1021/acs.chemmater.2c03190

Pascal Y. Schönberg, Li Ding, Frank Buchholz
Genom-Editierung ohne die DNA-Sequenz zu verändern — geht das?
Biospektrum 29(1):46–48 (Feb 21, 2023)
DOI: 10.1007/s12268-023-1882-2

Lucas Daniel Wittwer, Felix Reichel, Paul Müller, Jochen Guck, Sebastian Aland
A new hyperelastic lookup table for RT-DC
Soft Matter 19(11):2064–2073 (Feb 20, 2023)
DOI: 10.1039/d2sm01418a

Oded Rechavi, Pavel Tomancak
Who did what: changing how science papers are written to detail author contributions
Nat Rev Mol Cell Biol 24(8):519–520 (Feb 16, 2023)
DOI: 10.1038/s41580-023-00587-x

Lucas Kuhrts, Lukas Helmbrecht, Willem L. Noorduin, Darius Pohl, Xiaoxiao Sun, Alexander Palatnik, Cornelia Wetzker, Anne Jantschke, Michael Schlierf, Igor Zlotnikov
Recruiting Unicellular Algae for the Mass Production of Nanostructured Perovskites
Adv. Sci.2023, 2300355 (Feb 12, 2023)
DOI: 10.1002/advs.202300355

Mehdi Moghaddamfar, Norman May, Christian Färber, Wolfgang Lehner, Akash Kumar
A Study of Early Aggregation in Database Query Processing on FPGAs
Proceedings of the 2023 ACM/SIGDA International Symposium on Field Programmable Gate Arrays (Feb 10, 2023)
DOI: 10.1145/3543622.3573194

Blair P. Bentley, Tomás Carrasco-Valenzuela, Elisa K. S. Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M. Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan Wood, Kelsey Yetsko, Justin R. Perrault, Kelly Stewart, Scott R. Benson, Yaniv Levy, Erica V. Todd, H. Bradley Shaffer, Peter Scott, Brian T. Henen, Robert W. Murphy, David W. Mohr, Alan F. Scott, David J. Duffy, Neil J. Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F. Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H. Dutton, Olivier Fedrigo, Eugene W. Myers, Erich D. Jarvis, Camila J. Mazzoni, Lisa M. Komoroske
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories
Proc. Natl. Acad. Sci. U.S.A. 120(7) (Feb 7, 2023)
DOI: 10.1073/pnas.2201076120

Georg Krainer, Kadi L. Saar, William E. Arter, Timothy J. Welsh, Magdalena A. Czekalska, Raphaël P. B. Jacquat, Quentin Peter, Walther C. Traberg, Arvind Pujari, Akhila K. Jayaram, Pavankumar Challa, Christopher G. Taylor, Lize-Mari van der Linden, Titus Franzmann, Roisin M. Owens, Simon Alberti, David Klenerman, Tuomas P. J. Knowles
Direct digital sensing of protein biomarkers in solution
Nat Commun 14(1), 653 (Feb 6, 2023)
DOI: 10.1038/s41467-023-35792-x

Alicia Daeden, Alexander Mietke, Emmanuel Derivery, Carole Seum, Frank Jülicher, Marcos Gonzalez-Gaitan
Polarized branched Actin modulates cortical mechanics to produce unequal-size daughters during asymmetric division
Nat Cell Biol 25(2):235–245 (Feb 6, 2023)
DOI: 10.1038/s41556-022-01058-9

Qian Wu, Euclides Sacomboio, Lara Valente de Souza, Rui Martins, Jamil Kitoko, Sílvia Cardoso, Temitope W. Ademolue, Tiago Paixão, Jaakko Lehtimäki, Ana Figueiredo, Caren Norden, Pierre-Louis Tharaux, Guenter Weiss, Fudi Wang, Susana Ramos, Miguel P. Soares
Renal control of life-threatening malarial anemia
Cell Reports 42(2):112057 (Feb 2, 2023)
DOI: 10.1016/j.celrep.2023.112057

Mateusz Susik, Ivo F. Sbalzarini
Analysis of the Hamiltonian Monte Carlo genotyping algorithm on PROVEDIt mixtures including a novel precision benchmark
Forensic Science International: Genetics 64:102840 (Feb 1, 2023)
DOI: 10.1016/j.fsigen.2023.102840

Maarten P Bebelman, Matthew J Bovyn, Carlotta M Mayer, Julien Delpierre, Ronald Naumann, Nuno P Martins, Alf Honigmann, Yannis Kalaidzidis, Pierre A Haas, Marino Zerial
Hepatocyte apical bulkheads provide a mechanical means to oppose bile pressure
Journal of Cell Biology 222 (4), e202208002 (Jan 30, 2023)
DOI: 10.1083/jcb.202208002

Christa Ringers, Stephan Bialonski, Mert Ege, Anton Solovev, Jan Niklas Hansen, Inyoung Jeong, Benjamin M Friedrich, Nathalie Jurisch-Yaksi
Novel analytical tools reveal that local synchronization of cilia coincides with tissue-scale metachronal waves in zebrafish multiciliated epithelia
eLife 12:e77701 (Jan 26, 2023)
DOI: 10.7554/eLife.77701

Christoph R. Meinecke, Georg Heldt, Thomas Blaudeck, Frida W. Lindberg, Falco C. M. J. M. van Delft, Mohammad Ashikur Rahman, Aseem Salhotra, Alf Månsson, Heiner Linke, Till Korten, Stefan Diez, Danny Reuter, Stefan E. Schulz
Nanolithographic fabrication technologies for network-based biocomputation devices
Materials 16 (3) 1046 (Jan 24, 2023)
DOI: 10.3390/ma16031046

Ankush Checkervarty, Jens-Uwe Sommer, Marco Werner
Machine learning of an implicit solvent for dynamic Monte Carlo simulations
The Journal of Chemical Physics 158(12) (Jan 24, 2023)
DOI: 10.1063/5.0116618

Anne-Lena Moor, Christoph Zechner
Dynamic information transfer in stochastic biochemical networks
Physical Review Research 5(1):013032 (Jan 23, 2023)
DOI: 10.1103/PhysRevResearch.5.013032

Ali Al-Fatlawi, Michael Schroeder, A. Francis Stewart
The Rad52 SSAP superfamily and new insight into homologous recombination
Commun Biol 6(1), 87 (Jan 23, 2023)
DOI: 10.1038/s42003-023-04476-z

D. GroB, M. Klauck, T. P. Gros, M. Steinmetz, J. Hoffmann, S. Gumhold
Glyph-Based Visual Analysis of Q-Leaning Based Action Policy Ensembles on Racetrack
2022 26th International Conference Information Visualisation (IV) (Jan 23, 2023)
DOI: 10.1109/iv56949.2022.00011

Elias Scharf, Robert Kuschmierz, Ronja Stephan, Michael Steinke, Jürgen W. Czarske
Needle-size fibre endoscope with 3D printed DOEs for minimally invasive procedures in biomedicine
Biomedical Spectroscopy, Microscopy, and Imaging II (Jan 23, 2023)
DOI: 10.1117/12.2620319

Jürgen W. Czarske, Nektarios Koukourakis, Stefan Rothe, Felix Wagner, Mike O. Karl
Understanding neurodegeneration in human organoid retina with optical microscopy
Biomedical Spectroscopy, Microscopy, and Imaging II (Jan 23, 2023)
DOI: 10.1117/12.2622155

Belin Selcen Beydag-Tasöz, Siham Yennek, Anne Grapin-Botton
Towards a better understanding of diabetes mellitus using organoid models
Nat Rev Endocrinol (Jan 20, 2023)
DOI: 10.1038/s41574-022-00797-x

Arash Nikoubashman, Miho Yanagisawa
Confinement-Induced Fractionation and Liquid–Liquid Phase Separation of Polymer Mixtures
Polymers 15(3):511 (Jan 19, 2023)
DOI: 10.3390/polym15030511

Joël Mabillard, Christoph A. Weber, Frank Jülicher
Heat Fluctuations in Chemically Active Systems
Phys. Rev. E 107, 014118 (Jan 13, 2023)
DOI: 10.1103/PhysRevE.107.014118

Hongxia Hao, Ellen M. Adams, Sarah Funke, Gerhard Schwaab, Martina Havenith, Teresa Head-Gordon
Highly Altered State of Proton Transport in Acid Pools in Charged Reverse Micelles
J. Am. Chem. Soc. 145, 3, 1826–1834 (Jan 12, 2023)
DOI: 10.1021/jacs.2c11331

Ksenia Kuznetsova, Noémie M Chabot, Martino Ugolini, Edlyn Wu, Manan Lalit, Haruka Oda, Yuko Sato, Hiroshi Kimura, Florian Jug, Nadine L Vastenhouw
Nanog organizes transcription bodies
Current Biology 33 (1) (Jan 9, 2023)
DOI: 10.1016/j.cub.2022.11.015

Weilin Lin, Shanil Gandhi, Prabesh Bhattarai, Keida Kasa, Caghan Kizil, Yixin Zhang
Combining high throughput array synthesis and growth algorithm to discover TNF-α binders with new structures and properties
European Journal of Medicinal Chemistry. 248, 115078 (Jan 7, 2023)
DOI: 10.1016/j.ejmech.2022.115078

Samuel E. Lacey, Helen E. Foster, Gaia Pigino
The molecular structure of IFT-A and IFT-B in anterograde intraflagellar transport trains
Nat Struct Mol Biol 30(5):584–593 (Jan 2, 2023)
DOI: 10.1038/s41594-022-00905-5

Alessandro Mongera, Marie Pochitaloff, Hannah J. Gustafson, Georgina A. Stooke-Vaughan, Payam Rowghanian, Sangwoo Kim, Otger Campàs*
Mechanics of the cellular microenvironment as probed by cells in vivo during zebrafish presomitic mesoderm differentiation
Nat. Mater. 22, 135–143 (Jan 2023)
* corresponding author
DOI: 10.1038/s41563-022-01433-9

Mathias Schenkel, Dorna Ravamehr-Lake, Tomasz Czerniak, James P.Saenz, Georg Krainer, Michael Schlierf, Charles M. Deber
Impact of cholesterol and Lumacaftor on the folding of CFTR helical hairpins
Biochim Biophys Acta Biomembr 184078 (Jan 1, 2023)
DOI: 10.1016/j.bbamem.2022.184078

2022

256 publication(s) listed

Tina Helmecke, Dominik Hahn, Nadine Matzke, Lisa Ferdinand, Lars Franke, Sebastian Kühn, Gunter Fischer, Carsten Werner, Manfred F. Maitz
Inflammation‐Controlled Anti‐Inflammatory Hydrogels
Advanced Science 10(7) (Dec 30, 2022)
DOI: 10.1002/advs.202206412

Angela L. Caipa Garcia, Jill E. Kucab, Halh Al-Serori, Rebekah S. S. Beck, Franziska Fischer, Matthias Hufnagel, Andrea Hartwig, Andrew Floeder, Silvia Balbo, Hayley Francies, Mathew Garnett, Meritxell Huch, Jarno Drost, Matthias Zilbauer, Volker M. Arlt, David H. Phillips
Metabolic Activation of Benzo[a]pyrene by Human Tissue Organoid Cultures
IJMS 24(1):606 (Dec 30, 2022)
DOI: 10.3390/ijms24010606

Lukas Theo Schmitt, Maciej Paszkowski-Rogacz, Florian Jug, Frank Buchholz
Prediction of designer-recombinases for DNA editing with generative deep learning
Nat Commun 13(1), 7966 (Dec 27, 2022)
DOI: 10.1038/s41467-022-35614-6

Shanshan Xu, Maria E Gierisch, Anna Katharina Schellhaus, Ina Poser, Simon Alberti, Florian A Salomons, Nico P Dantuma
Cytosolic stress granules relieve the ubiquitin‐proteasome system in the nuclear compartment
The EMBO Journal 42(3) (Dec 27, 2022)
DOI: 10.15252/embj.2022111802

Katja Krug, Wolfgang Büschel, Konstantin Klamka, Raimund Dachselt
CleAR Sight: Exploring the Potential of Interacting with Transparent Tablets in Augmented Reality
2022 IEEE International Symposium on Mixed and Augmented Reality (ISMAR) (Dec 27, 2022)
DOI: 10.1109/ISMAR55827.2022.00034

Hannes Emmerich, Leon Knupfer, Sascha Heitkam, Eric Starke, Pavel Trtik, Ludwig Schaller, David Weik, Jurgen Czarske
Ultrasound imaging of liquid fraction in foam
IEEE Trans. Instrum. Meas. 1–1 (Dec 21, 2022)
DOI: 10.1109/tim.2022.3228582

William E. Arter, Runzhang Qi, Nadia A. Erkamp, Georg Krainer, Kieran Didi, Timothy J. Welsh, Julia Acker, Jonathan Nixon-Abell, Seema Qamar, Jordina Guillén-Boixet, Titus M. Franzmann, David Kuster, Anthony A. Hyman, Alexander Borodavka, Peter St George-Hyslop, Simon Alberti, Tuomas P. J. Knowles
Biomolecular condensate phase diagrams with a combinatorial microdroplet platform
Nature Communications volume 13, 7845 (Dec 21, 2022)
DOI: 10.1038/s41467-022-35265-7

Jiawei Sun, Nektarios Koukourakis, Jürgen W. Czarske
Real-time quantitative phase imaging through a multicore fiber using deep learning
Holography, Diffractive Optics, and Applications XII (Dec 20, 2022)
DOI: 10.1117/12.2642514

Maria K. Koch, Akhilandeshwari Ravichandran, Berline Murekatete, Julien Clegg, Mary Teresa Joseph, Madison Hampson, Mitchell Jenkinson, Hannah S. Bauer, Cameron Snell, Cheng Liu, Madeline Gough, Erik W. Thompson, Carsten Werner, Dietmar W. Hutmacher, Larisa M. Haupt, Laura J. Bray
Exploring the Potential of PEG‐Heparin Hydrogels to Support Long‐Term Ex Vivo Culture of Patient‐Derived Breast Explant Tissues
Adv Healthcare Materials 12(14) (Dec 17, 2022)
DOI: 10.1002/adhm.202202202

Lucas Woltmann, Claudio Hartmann, Wolfgang Lehner, Paul Rausch, Katja Ferger
Sensor-based jump detection and classification with machine learning in trampoline gymnastics
Ger J Exerc Sport Res 53(2):187–195 (Dec 8, 2022)
DOI: 10.1007/s12662-022-00866-3

Juliana Hildebrandt, Johannes Pietrzyk, Alexander Krause, Dirk Habich, Wolfgang Lehner
Partition-based SIMD Processing and its Application to Columnar Database Systems
Datenbank Spektrum 23(1):53–63 (Dec 7, 2022)
DOI: 10.1007/s13222-022-00431-0

Christoph Heintze, Iaroslav Babenko, Jirina Zackova Suchanova, Alastair Skeffington, Benjamin M. Friedrich, Nils Kröger
The molecular basis for pore pattern morphogenesis in diatom silica
Proc Natl Acad Sci U S A 119(49):e2211549119 (Dec 2, 2022)
DOI: 10.1073/pnas.2211549119

Elisa Donato, Nadia Correia, Carolin Andresen, Darja Karpova, Roberto Würth, Corinna Klein, Markus Sohn, Adriana Przybylla, Petra Zeisberger, Kathrin Rothfelder, Helmut Salih, Halvard Bonig, Sebastian Stasik, Christoph Röllig, Anna Dolnik, Lars Bullinger, Frank Buchholz, Christian Thiede, Daniel Hübschmann, Andreas Trumpp
Retained functional normal and preleukemic HSCs at diagnosis are associated with good prognosis in DNMT3AmutNPM1mut AMLs
Blood Advances 7(6):1011–1018 (Dec 1, 2022)
DOI: 10.1182/bloodadvances.2022008497

F. Schmieder, R. Habibey, V. Busskamp, J.W. Czarske, L. Büttner
Adaptive Holographic Optogenetic Illumination for Human Neural Network Analysis
Digital Holography and 3-D Imaging 2022 (Dec 1, 2022)
DOI: 10.1364/dh.2022.w4a.7

Alexis J. Haas, Ceniz Zihni, Susanne M. Krug, Riccardo Maraspini, Tetsuhisa Otani, Mikio Furuse, Alf Honigmann, Maria S. Balda, Karl Matter
ZO-1 Guides Tight Junction Assembly and Epithelial Morphogenesis via Cytoskeletal Tension-Dependent and -Independent Functions
Cells 11(23):3775 (Nov 28, 2022)
DOI: 10.3390/cells11233775

Thomas Bach, Artur Andrzejak, Changyun Seo, Christian Bierstedt, Christian Lemke, Daniel Ritter, Dong Won Hwang, Erda Sheshi, Felix Schabernack, Frank Renkes, Gordon Gaumnitz, Jakob Martens, Lars Hoemke, Michael Felderer, Michael Rudolf, Neetha Jambigi, Norman May, Robin Joy, Ruben Scheja, Sascha Schwedes, Sebastian Seibel, Sebastian Seifert, Stefan Haas, Stephan Kraft, Thomas Kroll, Tobias Scheuer, Wolfgang Lehner
Testing Very Large Database Management Systems: The Case of SAP HANA
Datenbank Spektrum 22(3):195–215 (Nov 25, 2022)
DOI: 10.1007/s13222-022-00426-x

Verena Kast, Ali Nadernezhad, Dagmar Pette, Anastasiia Gabrielyan, Maximilian Fusenig, Kim C. Honselmann, Daniel E. Stange, Carsten Werner, Daniela Loessner
A Tumor Microenvironment Model of Pancreatic Cancer to Elucidate Responses toward Immunotherapy
Adv Healthcare Materials 12(14) (Nov 24, 2022)
DOI: 10.1002/adhm.202201907

Laura Martínez‐Vidal, Valentina Magno, Petra B. Welzel, Jens Friedrichs, Martin Bornhäuser, Carsten Werner
Combining Cryogel Architecture and Macromolecular Crowding‐Enhanced Extracellular Matrix Cues to Mimic the Bone Marrow Niche
Macro Chemistry & Physics 224(1) (Nov 24, 2022)
DOI: 10.1002/macp.202200348

Moritz Thümler, Malte Schröder, Marc Timme
Nonlinear and divergent responses of fluctuation-driven systems
IFAC-PapersOnLine 55(30):254–259 (Nov 23, 2022)
DOI: 10.1016/j.ifacol.2022.11.061

Keisuke Ishihara, Arghyadip Mukherjee, Elena Gromberg, Jan Brugués, Elly M. Tanaka, Frank Jülicher
Topological Morphogenesis of Neuroepithelial Organoids
Nature Physics, 19, 177–183 (online: Nov 21, 2022)
DOI: 10.1038/s41567-022-01822-6

Zhi-Feng Huang, Hartmut Löwen, Axel Voigt
Defect dynamics in active smectics induced by confining geometry and topology
Commun Phys 5(1), 294 (Nov 19, 2022)
DOI: 10.1038/s42005-022-01064-1

Willi G. Mantei, Benedikt Stender, Jonas Wiedenmann, Elias Scharf, Robert Kuschmierz, Jürgen W. Czarske
Needle-shaped lensless holographic endoscopes realized with TPP
Optical Fibers and Sensors for Medical Diagnostics, Treatment and Environmental Applications XXII (Nov 18, 2022)
DOI: 10.1117/12.2608705

Rahul O. Ramakrishnan, Andrea Auconi and Benjamin M. Friedrich
Learning stochastic filtering
EPL 140 31002 (Nov 17, 2022)
DOI: 10.1209/0295-5075/ac9d01

Tina Subic, Ivo F. Sbalzarini
A Gaussian jump process formulation of the reaction-diffusion master equation enables faster exact stochastic simulations
J. Chem. Phys. 157, 194110 (Nov 17, 2022)
DOI: 10.1063/5.0123073

Frank Jülicher, Jacques Prost, John Toner
Broken Living Layers: Dislocations in Active Smectic Liquid Crystals
Phys. Rev. E 106, 054607 (Nov 15, 2022)
DOI: 10.1103/PhysRevE.106.054607

Stefan Rothe, Qian Zhang, Dennis Pohle, Nektarios Koukourakis, Juergen W. Czarske
Smart transmission matrix measurement of multimode fibers using digital holography and deep learning for confidential data transmission
Digital Holography and 3-D Imaging 2022 (Nov 10, 2022)
DOI: 10.1364/dh.2022.m2a.5

Caitlyn L McCafferty, Ophelia Papoulas, Mareike A Jordan, Gabriel Hoogerbrugge, Candice Nichols, Gaia Pigino, David W Taylor, John B Wallingford, Edward M Marcotte
Integrative modeling reveals the molecular architecture of the intraflagellar transport A (IFT-A) complex
eLife 11 (Nov 8, 2022)
DOI: 10.7554/elife.81977

Jiachen Wu, Tijue Wang, Ortrud Uckermann, Roberta Galli, Gabriele Schackert, Liangcai Cao, Juergen Czarske, Robert Kuschmierz
Learned end-to-end high-resolution lensless fiber imaging towards real-time cancer diagnosis
Sci Rep 12(1), 18846 (Nov 7, 2022)
DOI: 10.1038/s41598-022-23490-5

Julius Gonsior, Maik Thiele, Wolfgang Lehner
ImitAL: Learned Active Learning Strategy on Synthetic Data
Lecture Notes in Computer Science 47–56 (Nov 5, 2022)
DOI: 10.1007/978-3-031-18840-4_4

Takashi Nishio, Tomoya Masaoka, Yuko Yoshikawa, Koichiro Sadakane, Takahiro Kenmotsu, Helmut Schiessel, Kenichi Yoshikawa
Markedly Different Effects of Monovalent Cations on the Efficiency of Gene Expression
Advanced Biology 7(3) (Nov 4, 2022)
DOI: 10.1002/adbi.202200164

Anne Grapin-Botton, Yung Hae Kim
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Michael Nestler, Axel Voigt
Active Nematodynamics on Curved Surfaces – The Influence of Geometric Forces on Motion Patterns of Topological Defects
Communications in Computational Physics, Vol. 31 (Jan 2022)
DOI: 10.4208/CICP.OA-2021-0206

2021

247 publication(s) listed

Frederic Carsten Schmeel, Asadeh Lakghomi, Nils Christian Lehnen, Robert Haase, Mohammed Banat, Johannes Wach, Nikolaus Handke, Hartmut Vatter, Alexander Radbruch, Ulrike Attenberger, Julian Alexander Luetkens
Proton Density Fat Fraction Spine MRI for Differentiation of Erosive Vertebral Endplate Degeneration and Infectious Spondylitis
Diagnostics 12(1):78 (Dec 31, 2021)
DOI: 10.3390/diagnostics12010078

Sara Vanessa Bernhard, Katarzyna Seget-Trzensiok, Christian Kuffer, Dragomir B. Krastev, Lisa-Marie Stautmeister, Mirko Theis, Kristina Keuper, Jan-Eric Boekenkamp, Maik Kschischo, Frank Buchholz, Zuzana Storchova
Loss of USP28 and SPINT2 expression promotes cancer cell survival after whole genome doubling
Cell Oncol. 45(1):103–119 (Dec 28, 2021)
DOI: 10.1007/s13402-021-00654-5

Sadra Bakhshandeh, Carsten Werner, Peter Fratzl, Amaia Cipitria
Microenvironment-mediated cancer dormancy: Insights from metastability theory
Proc. Natl. Acad. Sci. U.S.A. 119(1) (Dec 23, 2021)
DOI: 10.1073/pnas.2111046118

Lucas Woltmann, Peter Volk, Michael Dinzinger, Lukas Gräf, Sebastian Strasser, Johannes Schildgen, Claudio Hartmann, Wolfgang Lehner
Data Science Meets High-Tech Manufacturing – The BTW 2021 Data Science Challenge
Datenbank Spektrum 22(1):5–10 (Dec 21, 2021)
DOI: 10.1007/s13222-021-00398-4

Jesse V. Veenvliet, Pierre-François Lenne, David A. Turner, Iftach Nachman, Vikas Trivedi
Sculpting with stem cells: how models of embryo development take shape
Development 148 (24): dev192914 (Dec 15, 2021)
DOI: 10.1242/dev.192914

Karl B. Hoffmann, Ivo F. Sbalzarini
Estimation of unordered core size using a robustness measure for topological defects in discretized orientation and vector fields
Proc. Appl. Math. Mech., 21(1): e202100105 (Dec 14, 2021)
DOI: 10.1002/pamm.202100105

Juliane Valtin, Stephan Behrens, Manfred F. Maitz, Florian Schmieder, Frank Sonntag, Carsten Werner
A modular in vitro flow model to analyse blood-surface interactions under physiological conditions
Current Directions in Biomedical Engineering 7(2):171–174 (Dec 10, 2021)
DOI: 10.1515/cdbme-2021-2044

Prasath Paramasivam, Christian Franke, Martin Stöter, Andreas Höijer, Stefano Bartesaghi, Alan Sabirsh, Lennart Lindfors, Marianna Yanez Arteta, Anders Dahlén, Annette Bak, Shalini Andersson, Yannis Kalaidzidis, Marc Bickle, Marino Zerial
Endosomal escape of delivered mRNA from endosomal recycling tubules visualized at the nanoscale
J Cell Biol, 221 (2): e202110137. (Dec 9, 2021)
DOI: 10.1083/jcb.202110137

Robert Kuschmierz, Elias Scharf, David F. Ortegón-González, Tom Glosemeyer, Jürgen W. Czarske
Ultra-thin 3D lensless fiber endoscopy using diffractive optical elements and deep neural networks
Light: Advanced Manufacturing 2, Article number: 30 (Dec 6, 2021)
DOI: 10.37188/lam.2021.030

Yuhan Wang, Mark Eddison, Greg Fleishman, Martin Weigert, Shengjin Xu, Tim Wang, Konrad Rokicki, Cristian Goina, Fredrick E. Henry, Andrew L. Lemire, Uwe Schmidt, Hui Yang, Karel Svoboda, Eugene W. Myers, Stephan Saalfeld, Wyatt Korff, Scott M. Sternson, Paul W. Tillberg
EASI-FISH for thick tissue defines lateral hypothalamus spatio-molecular organization
Cell 184(26):6361–6377.e24 (Dec 6, 2021)
DOI: 10.1016/j.cell.2021.11.024

Alan Ianeselli, Damla Tetiker, Julian Stein, Alexandra Kühnlein, Christof B. Mast, Dieter Braun, T.-Y. Dora Tang
Non-equilibrium conditions inside rock pores drive fission, maintenance and selection of coacervate protocells
Nat. Chem. 14(1):32–39 (Dec 6, 2021)
DOI: 10.1038/s41557-021-00830-y

Fabio Schittler Neves, Marc Timme
Decoding complex state space trajectories for neural computing
Chaos: An Interdisciplinary Journal of Nonlinear Science 31(12) (Dec 6, 2021)
DOI: 10.1063/5.0053429

Jenna Hoersten, Gloria Ruiz-Gómez, Felix Lansing, Teresa Rojo-Romanos, Lukas Theo Schmitt, Jan Sonntag, M Teresa Pisabarro, Frank Buchholz
Pairing of single mutations yields obligate Cre-type site-specific recombinases
Nucleic Acids Research 50(2):1174–1186 (Dec 6, 2021)
DOI: 10.1093/nar/gkab1240

Ingo Nitschke, Axel Voigt
Observer-invariant time derivatives on moving surfaces
Journal of Geometry and Physics 173:104428 (Dec 3, 2021)
DOI: 10.1016/j.geomphys.2021.104428

Neha Goveas, Claudia Waskow, Kathrin Arndt, Julian Heuberger, Qinyu Zhang, Dimitra Alexopoulou, Andreas Dahl, Walter Birchmeier, Konstantinos Anastassiadis, A. Francis Stewart, Andrea Kranz
MLL1 is required for maintenance of intestinal stem cells
PLoS Genet 17(12):e1009250 (Dec 3, 2021)
DOI: 10.1371/journal.pgen.1009250

Cordula Reuther, Sönke Steenhusen, Christoph Robert Meinecke, Pradheebha Surendiran, Aseem Salhotra, Frida W Lindberg, Alf Månsson, Heiner Linke, Stefan Diez
Molecular motor-driven filament transport across three-dimensional, polymeric micro-junctions
New J. Phys. 23, 125002 (Dec 2, 2021)
DOI: 10.1088/1367-2630/ac39b4

Stefano Bo, Lars Hubatsch, Jonathan Bauermann, Christoph A. Weber, Frank Jülicher
Stochastic dynamics of single molecules across phase boundaries
Phys. Rev. Research 3, 043150, (Dec 2, 2021)
DOI: 10.1103/PhysRevResearch.3.043150

Xueping Zhao, Giacomo Bartolucci, Alf Honigmann, Frank Jülicher, Christoph A Weber
Thermodynamics of Wetting, Prewetting and Surface Phase Transitions with Surface Binding
New J. Phys. 23, 123003, (Dec 1, 2021)
DOI: 10.1088/1367-2630/ac320b

Dennis Schifferl, Manuela Scholze-Wittler, Lars Wittler, Jesse V. Veenvliet, Frederic Koch, Bernhard G. Herrmann
A 37 kb region upstream of brachyury comprising a notochord enhancer is essential for notochord and tail development
Development 148(23) (Nov 25, 2021)
DOI: 10.1242/dev.200059

D. Wenzel and A. Voigt
Multiphase field models for collective cell migration
Phys. Rev. E 104, 054410 (Nov 24, 2021)
DOI: 10.1103/PhysRevE.104.054410

Alexandra Michurina, M Sadman Sakib, Cemil Kerimoglu, Dennis Manfred Krüger, Lalit Kaurani, Md Rezaul Islam, Parth Devesh Joshi, Sophie Schröder, Tonatiuh Pena Centeno, Jiayin Zhou, Ranjit Pradhan, Julia Cha, Xingbo Xu, Gregor Eichele, Elisabeth M Zeisberg, Andrea Kranz, A Francis Stewart, André Fischer
Postnatal expression of the lysine methyltransferase SETD1B is essential for learning and the regulation of neuron‐enriched genes
The EMBO Journal 41(1) (Nov 22, 2021)
DOI: 10.15252/embj.2020106459

Nesrine Khouzami, Friedrich Michel, Pietro Incardona, Jeronimo Castrillon, Ivo F. Sbalzarini
Model-based autotuning of discretization methods in numerical simulations of partial differential equations
Journal of Computational Science 57:101489 (Nov 20, 2021)
DOI: 10.1016/j.jocs.2021.101489

Robert Haase
Image Processing Filters for Grids of Cells Analogous to Filters Processing Grids of Pixels
Front. Comput. Sci. 3 (Nov 19, 2021)
DOI: 10.3389/fcomp.2021.774396

Fabio S Neves, Marc Timme
Bio-inspired computing by nonlinear network dynamics—a brief introduction
J. Phys. Complex. 2(4):045019 (Nov 17, 2021)
DOI: 10.1088/2632-072x/ac3ad4

Yukako Oda, Chisato Takahashi, Shota Harada, Shun Nakamura, Daxiao Sun, Kazumi Kiso, Yuko Urata, Hitoshi Miyachi, Yoshinori Fujiyoshi, Alf Honigmann, Seiichi Uchida, Yasushi Ishihama, Fumiko Toyoshima
Discovery of anti-inflammatory physiological peptides that promote tissue repair by reinforcing epithelial barrier formation
Sci. Adv. 7(47) (Nov 17, 2021)
DOI: 10.1126/sciadv.abj6895

Chloé Roffay, Guillaume Molinard, Kyoohyun Kim, Marta Urbanska, Virginia Andrade, Victoria Barbarasa, Paulina Nowak, Vincent Mercier, José García-Calvo, Stefan Matile, Robbie Loewith, Arnaud Echard, Jochen Guck, Martin Lenz, Aurélien Roux
Passive coupling of membrane tension and cell volume during active response of cells to osmosis
Proc. Natl. Acad. Sci. U.S.A. 118(47) (Nov 16, 2021)
DOI: 10.1073/pnas.2103228118

Byung Ho Lee, Irene Seijo-Barandiaran, Anne Grapin-Botton
Epithelial morphogenesis in organoids
Current Opinion in Genetics & Development 72:30–37 (Nov 15, 2021)
DOI: 10.1016/j.gde.2021.10.001

Alberto Bertozzi, Chi-Chung Wu, Stefan Hans, Michael Brand, Gilbert Weidinger
Wnt/β-catenin signaling acts cell-autonomously to promote cardiomyocyte regeneration in the zebrafish heart
Developmental Biology (Nov 15, 2021)
DOI: 10.1016/j.ydbio.2021.11.001

David Weik, Richard Nauber, Lars Buttner, Jurgen Czarske, Dirk Rabiger, Sanjay Singh, Tobias Vogt, Sven Eckert
Ultrasound Image Velocimetry with Adaptive Beamforming for Modal Measurements in Liquid Metal Convection
2021 IEEE International Ultrasonics Symposium (IUS) (Nov 13, 2021)
DOI: 10.1109/ius52206.2021.9593429

Dalileh Nabi, Hauke Drechsler, Johannes Pschirer, Franz Korn, Nadine Schuler, Stefan Diez, Rolf Jessberger, Mariola Chacón
CENP-V is required for proper chromosome segregation through interaction with spindle microtubules in mouse oocytes
Nat Commun 12, 6547 (Nov 11, 2021)
DOI: 10.1038/s41467-021-26826-3

Johannes Girstmair, HongKee Moon, Charlène Brillard, Robert Haase, Pavel Tomancak
Time to Upgrade: A New OpenSPIM Guide to Build and Operate Advanced OpenSPIM Configurations
Advanced Biology 6(4) (Nov 11, 2021)
DOI: 10.1002/adbi.202101182

Judit Clopés, Jaeoh Shin, Marcus Jahnel, Stephan W. Grill, Vasily Zaburdaev
Thermal fluctuations assist mechanical signal propagation in coiled-coil proteins
Phys. Rev. E 104(5), 054403 (Nov 11, 2021)
DOI: 10.1103/physreve.104.054403

Safak Chasan, Eliane Hesse, Passant Atallah, Matthias Gerstner, Solvig Diederichs, Astrid Schenker, Kay Grobe, Carsten Werner, Wiltrud Richter
Sulfation of Glycosaminoglycan Hydrogels Instructs Cell Fate and Chondral versus Endochondral Lineage Decision of Skeletal Stem Cells In Vivo
Adv Funct Materials 32(7) (Nov 6, 2021)
DOI: 10.1002/adfm.202109176

Felix Schmieder, Rouhollah Habibey, Volker Busskamp, Lars Büttner, Jürgen W. Czarske
Analysis of human iPSC-derived neuronal networks (hiPSCNN) using holographic single cell and full field optogenetic stimulation
Biophotonics Congress 2021 (Nov 5, 2021)
DOI: 10.1364/brain.2021.bm1b.4

Vaibhav Mahajan, Timon Beck, Paulina Gregorczyk, André Ruland, Simon Alberti, Jochen Guck, Carsten Werner, Raimund Schlüßler, Anna Verena Taubenberger
Mapping Tumor Spheroid Mechanics in Dependence of 3D Microenvironment Stiffness and Degradability by Brillouin Microscopy
Cancers 13(21):5549 (Nov 5, 2021)
DOI: 10.3390/cancers13215549

Tooba Quidwai, Jiaolong Wang, Emma A Hall, Narcis A Petriman, Weihua Leng, Petra Kiesel, Jonathan N Wells, Laura C Murphy, Margaret A Keighren, Joseph A Marsh, Esben Lorentzen, Gaia Pigino, Pleasantine Mill
A WDR35-dependent coat protein complex transports ciliary membrane cargo vesicles to cilia
eLife 10 (Nov 4, 2021)
DOI: 10.7554/elife.69786

Weizhou Luo, Eva Goebel, Patrick Reipschläger, Mats Ole Ellenberg, Raimund Dachselt
Exploring and Slicing Volumetric Medical Data in Augmented Reality Using a Spatially-Aware Mobile Device
IEEE International Symposium on Mixed and Augmented Reality Adjunct (ISMAR-Adjunct) (Nov 3, 2021)
DOI: 10.1109/ISMAR-Adjunct54149.2021.00076

Lucas Woltmann, Dominik Olwig, Claudio Hartmann, Dirk Habich, Wolfgang Lehner
PostCENN
Proc. VLDB Endow. 14(12):2715–2718 (Oct 28, 2021)
DOI: 10.14778/3476311.3476327

Philip Marszal, Marc Timme, Malte Schröder
Phase separation induces congestion waves in electric vehicle charging
Phys. Rev. E 104(4), L042302 (Oct 26, 2021)
DOI: 10.1103/physreve.104.l042302

Iliya D. Stoev, Benjamin Seelbinder, Elena Erben, Nicola Maghelli, Moritz Kreysing
Highly sensitive force measurements in an optically generated, harmonic hydrodynamic trap
eLight, 1, 7 (Oct 23, 2021)
DOI: 10.1186/s43593-021-00007-7

Xue Wang, Wentao Zheng, Haibo Zhou, Qiang Tu, Ya-Jie Tang, A Francis Stewart, Youming Zhang, Xiaoying Bian
Improved dsDNA recombineering enables versatile multiplex genome engineering of kilobase-scale sequences in diverse bacteria
Nucleic Acids Research 50(3):e15–e15 (Oct 22, 2021)
DOI: 10.1093/nar/gkab1076

Lars Hubatsch, Louise M Jawerth, Celina Love, Jonathan Bauermann, TY Dora Tang, Stefano Bo, Anthony A Hyman, Christoph A Weber
Quantitative theory for the diffusive dynamics of liquid condensates
Elife 12 (10), e68620 (Oct 21, 2021)
DOI: 10.7554/eLife.68620

Cindy D. Beyer, Sugina Thavalingam, Tatiana Guseva, Lisa Schardt, Ralf Zimmermann, Carsten Werner, Pascal Dietze, Julia Elisabeth Bandow, Nils Metzler-Nolte, Axel Rosenhahn
Zwitterionic Peptides Reduce Accumulation of Marine and Freshwater Biofilm Formers
ACS Appl. Mater. Interfaces 13(42):49682–49691 (Oct 20, 2021)
DOI: 10.1021/acsami.1c13459

Robert Wagner, Sabine S. Eckstein, Hajime Yamazaki, Felicia Gerst, Jürgen Machann, Benjamin Assad Jaghutriz, Annette Schürmann, Michele Solimena, Stephan Singer, Alfred Königsrainer, Andreas L. Birkenfeld, Hans-Ulrich Häring, Andreas Fritsche, Susanne Ullrich, Martin Heni
Metabolic implications of pancreatic fat accumulation
Nat Rev Endocrinol 18(1):43–54 (Oct 20, 2021)
DOI: 10.1038/s41574-021-00573-3

M. Sankaranarayanan, Ryan J. Emenecker, Elise L. Wilby, Marcus Jahnel, Irmela R.E.A. Trussina, Matt Wayland, Simon Alberti, Alex S. Holehouse, Timothy T. Weil
Adaptable P body physical states differentially regulate bicoid mRNA storage during early Drosophila development
Developmental Cell 56(20):2886–2901.e6 (Oct 19, 2021)
DOI: 10.1016/j.devcel.2021.09.021

Nicolas Hauck, Talika A. Neuendorf, Max J. Männel, Lucas Vogel, Ping Liu, Enno Stündel, Yixin Zhang, Julian Thiele
Processing of fast-gelling hydrogel precursors in microfluidics by electrocoalescence of reactive species
Soft Matter (Oct 19, 2021)
DOI: 10.1039/D1SM01176F

Adrien Sthoer, Ellen M. Adams, Sanghamitra Sengupta, Robert W. Corkery, Heather C. Allen, Eric C. Tyrode
La3+ and Y3+ interactions with the carboxylic acid moiety at the liquid/vapor interface: Identification of binding complexes, charge reversal, and detection limits
Journal of Colloid and Interface Science 608:2169–2180 (Oct 18, 2021)
DOI: 10.1016/j.jcis.2021.10.052

Mrityunjoy Kar, Ammon E. Posey, Furqan Dar, Anthony A. Hyman, Rohit V. Pappu
Glycine-Rich Peptides from FUS Have an Intrinsic Ability to Self-Assemble into Fibers and Networked Fibrils
Biochemistry 60(43):3213–3222 (Oct 16, 2021)
DOI: 10.1021/acs.biochem.1c00501

Eduard Jorswieck, Andrew Lonnstrom, Karl-Ludwig Besser, Stefan Rothe, Juergen W. Czarske
Achievable Physical-Layer Secrecy in Multi-Mode Fiber Channels using Artificial Noise
2021 17th International Symposium on Wireless Communication Systems (ISWCS) (Oct 15, 2021)
DOI: 10.1109/iswcs49558.2021.9562176

Ana Rodríguez Sánchez-Archidona, Céline Cruciani-Guglielmacci, Clara Roujeau, Leonore Wigger, Justine Lallement, Jessica Denom, Marko Barovic, Nadim Kassis, Florence Mehl, Jurgen Weitz, Marius Distler, Christian Klose, Kai Simons, Mark Ibberson, Michele Solimena, Christophe Magnan, Bernard Thorens
Plasma triacylglycerols are biomarkers of β-cell function in mice and humans
Molecular Metabolism 54:101355 (Oct 12, 2021)
DOI: 10.1016/j.molmet.2021.101355

Edgar E Boczek, Julius Fürsch, Marie Laura Niedermeier, Louise Jawerth, Marcus Jahnel, Martine Ruer-Gruß, Kai-Michael Kammer, Peter Heid, Laura Mediani, Jie Wang, Xiao Yan, Andrej Pozniakovski, Ina Poser, Daniel Mateju, Lars Hubatsch, Serena Carra, Simon Alberti, Anthony A Hyman, Florian Stengel
HspB8 prevents aberrant phase transitions of FUS by chaperoning its folded RNA-binding domain
eLife 10:e69377 (Oct 12, 2021)
DOI: 10.7554/eLife.69377

Lars Kegel, Claudio Hartmann, Maik Thiele, Wolfgang Lehner
Season- and Trend-aware Symbolic Approximation for Accurate and Efficient Time Series Matching
Datenbank Spektrum 21(3):225–236 (Oct 7, 2021)
DOI: 10.1007/s13222-021-00389-5

C. Shan Xu, Song Pang, Gleb Shtengel, Andreas Müller, Alex T. Ritter, Huxley K. Hoffman, Shin-ya Takemura, Zhiyuan Lu, H. Amalia Pasolli, Nirmala Iyer, Jeeyun Chung, Davis Bennett, Aubrey V. Weigel, Melanie Freeman, Schuyler B. van Engelenburg, Tobias C. Walther, Robert V. Farese, Jennifer Lippincott-Schwartz, Ira Mellman, Michele Solimena, Harald F. Hess
An open-access volume electron microscopy atlas of whole cells and tissues
Nature 599(7883):147–151 (Oct 7, 2021)
DOI: 10.1038/s41586-021-03992-4

Sara N. Nagelberg*, Jan F. Totz*, Matthäus Mittasch, Vishnu Sresht, Lukas Zeininger, Timothy M Swager, Moritz Kreysing, Mathias Kolle
Actuation of Janus Emulsion Droplets via Optothermally Induced Marangoni Forces
Phys Rev Lett 127(14):144503 (Oct 1, 2021)
DOI: 10.1103/PhysRevLett.127.144503

Jana Sievers, Ralf Zimmermann, Jens Friedrichs, Dagmar Pette, Yanuar Dwi Putra Limasale, Carsten Werner, Petra Birgit Welzel
Customizing biohybrid cryogels to serve as ready-to-use delivery systems of signaling proteins
Biomaterials 278:121170 (Oct 1, 2021)
DOI: 10.1016/j.biomaterials.2021.121170

Andrea Auconi, Benjamin M. Friedrich, Andrea Giansanti
Fluctuation-response theorem for Kullback-Leibler divergences to quantify causation
EPL 135(2):28002 (Sep 30, 2021)
DOI: 10.1209/0295-5075/135/28002

Zahra Ghezelayagh, Mahsa Zabihi, Ibrahim Zarkesh, Carla A. C. Gonçalves, Michael Larsen, Newsha Hagh-parast, Mohammad Pakzad, Massoud Vosough, Babak Arjmand, Hossein Baharvand, Bagher Larijani, Anne Grapin-Botton, Hamid Reza Aghayan, Yaser Tahamtani
Improved Differentiation of hESC-Derived Pancreatic Progenitors by Using Human Fetal Pancreatic Mesenchymal Cells in a Micro‐scalable Three-Dimensional Co-culture System
Stem Cell Rev and Rep 18(1):360–377 (Sep 29, 2021)
DOI: 10.1007/s12015-021-10266-z

Jingyuan Zhu, Till Korten, Hillel Kugler, Falco van Delft, Alf Månsson, Danny Reuter, Stefan Diez, Heiner Linke
Physical requirements for scaling up network-based biocomputation
New J. Phys. 23(10):105004 (Sep 29, 2021)
DOI: 10.1088/1367-2630/ac2a5d

Stefan Rothe, Philipp Daferner, Sebastian Heide, David Krause, Felix Schmieder, Nektarios Koukourakis, Jürgen W. Czarske
Benchmarking analysis of computer generated holograms for complex wavefront shaping using pixelated phase modulators
Opt. Express 29(23):37602 (Sep 29, 2021)
DOI: 10.1364/oe.434842

Tom Horak, Norine Coenen, Niklas Metzger, Christopher Hahn, Tamara Flemisch, Julián Méndez, Dennis Dimov, Bernd Finkbeiner, Raimund Dachselt
Visual Analysis of Hyperproperties for Understanding Model Checking Results
IEEE Transactions on Visualization and Computer Graphics 28 (1), 357-367 (Sep 29, 2021)
DOI: 10.1109/TVCG.2021.3114866

Charlie Duclut, Joris Paijmans, Mandar M Inamdar, Carl D. Modes, Frank Jülicher
Nonlinear Rheology of Cellular Networks
Cells and Development, 203746 (Sep 27, 2021)
DOI: 10.1016/j.cdev.2021.203746

Kristian Le Vay, Emilie Yeonwha Song, Basusree Ghosh, T.‐Y. Dora Tang, Hannes Mutschler
Enhanced Ribozyme‐Catalyzed Recombination and Oligonucleotide Assembly in Peptide‐RNA Condensates
Angew Chem Int Ed 60(50):26096–26104 (Sep 27, 2021)
DOI: 10.1002/anie.202109267

B. Duygu Özpolat, Nadine Randel, Elizabeth A. Williams, Luis Alberto Bezares-Calderón, Gabriele Andreatta, Guillaume Balavoine, Paola Y. Bertucci, David E. K. Ferrier, Maria Cristina Gambi, Eve Gazave, Mette Handberg-Thorsager, Jörg Hardege, Cameron Hird, Yu-Wen Hsieh, Jerome Hui, Kevin Nzumbi Mutemi, Stephan Q. Schneider, Oleg Simakov, Hernando M. Vergara, Michel Vervoort, Gáspár Jékely, Kristin Tessmar-Raible, Florian Raible, Detlev Arendt
The Nereid on the rise: Platynereis as a model system
EvoDevo 12(1), 10 (Sep 27, 2021)
DOI: 10.1186/s13227-021-00180-3

Stefan Dannenmaier, Christine Desroches Altamirano, Lisa Schüler, Ying Zhang, Johannes Hummel, Martin Milanov, Silke Oeljeklaus, Hans-Georg Koch, Sabine Rospert, Simon Alberti, Bettina Warscheid
Quantitative proteomics identifies the universally conserved ATPase Ola1p as a positive regulator of heat shock response in Saccharomyces cerevisiae
Journal of Biological Chemistry 297(5):101050 (Sep 24, 2021)
DOI: 10.1016/j.jbc.2021.101050

Abhinav Singh, Pietro Incardona, Ivo F. Sbalzarini
A C++ expression system for partial differential equations enables generic simulations of biological hydrodynamics
Eur. Phys. J. E 44, 117 (2021). (Sep 23, 2021)
DOI: 10.1140/epje/s10189-021-00121-x

Giovanni Sirio Carmantini, Fabio Schittler Neves, Marc Timme, Serafim Rodrigues
Stochastic facilitation in heteroclinic communication channels
Chaos. 31 (9): 093130. (Sep 23, 2021)
DOI: 10.1063/5.0054485

Dominik Hahn, Jannick M. Sonntag, Steffen Lück, Manfred F. Maitz, Uwe Freudenberg, Rainer Jordan, Carsten Werner
Poly(2‐alkyl‐2‐oxazoline)‐Heparin Hydrogels—Expanding the Physicochemical Parameter Space of Biohybrid Materials
Adv Healthcare Materials 10(22) (Sep 20, 2021)
DOI: 10.1002/adhm.202101327

Fabio Novelli, Claudius Hoberg, Ellen M. Adams, J. Michael Klopf, Martina Havenith
Terahertz pump–probe of liquid water at 12.3 THz
Phys. Chem. Chem. Phys. 24(2):653–665 (Sep 17, 2021)
DOI: 10.1039/d1cp03207k

Natalia Gorenkova, Manfred F. Maitz, Georg Böhme, Hani A. Alhadrami, Essam H. Jiffri, John D. Totten, Carsten Werner, Hilary V. O. Carswell, F. Philipp Seib
The innate immune response of self-assembling silk fibroin hydrogels
Biomater. Sci. 9(21):7194–7204 (Sep 15, 2021)
DOI: 10.1039/d1bm00936b

Anatol W. Fritsch, Andrés F. Diaz-Delgadillo, Omar Adame-Arana, Carsten Hoege, Matthäus Mittasch, Moritz Kreysing, Mark Leaver, Anthony A. Hyman, Frank Jülicher, and Christoph A. Weber
Local thermodynamics govern formation and dissolution of Caenorhabditis elegans P granule condensates
PNAS September 14, 2021 118 (37) e2102772118 (Sep 14, 2021)
DOI: 10.1073/pnas.2102772118

Pallavi Subramanian, Sofia Gargani, Alessandra Palladini, Margarita Chatzimike, Michal Grzybek, Mirko Peitzsch, Anastasios D. Papanastasiou, Iryna Pyrina, Vasileios Ntafis, Bettina Gercken, Mathias Lesche, Andreas Petzold, Anupam Sinha, Marina Nati, Veera Raghavan Thangapandi, Ioannis Kourtzelis, Margarita Andreadou, Anke Witt, Andreas Dahl, Ralph Burkhardt, Robert Haase, António Miguel de Jesus Domingues, Ian Henry, Nicola Zamboni, Peter Mirtschink, Kyoung‐Jin Chung, Jochen Hampe, Ünal Coskun, Dimitris L. Kontoyiannis, Triantafyllos Chavakis
The RNA binding protein human antigen R is a gatekeeper of liver homeostasis
Hepatology 75(4):881–897 (Sep 14, 2021)
DOI: 10.1002/hep.32153

Elisabeth Kemter, Andreas Müller, Martin Neukam, Anna Ivanova, Nikolai Klymiuk, Simone Renner, Kaiyuan Yang, Johannes Broichhagen, Mayuko Kurome, Valeri Zakhartchenko, Barbara Kessler, Klaus-Peter Knoch, Marc Bickle, Barbara Ludwig, Kai Johnsson, Heiko Lickert, Thomas Kurth, Eckhard Wolf, Michele Solimena
Sequential in vivo labeling of insulin secretory granule pools inINS-SNAPtransgenic pigs
Proc. Natl. Acad. Sci. U.S.A. 118(37) (Sep 14, 2021)
DOI: 10.1073/pnas.2107665118

Elena Erben, Benjamin Seelbinder, Iliya D. Stoev, Sergei Klykov, Nicola Maghelli, Moritz Kreysing
Feedback-based positioning and diffusion suppression of particles via optical control of thermoviscous flows
Opt Express, 29(19):30272–30283 (Sep 13, 2021)
DOI: 10.1364/oe.432935

Gonzalo Rosso, Daniel Wehner, Christine Schweitzer, Stephanie Möllmert, Elisabeth Sock, Jochen Guck, Victor Shahin
Matrix stiffness mechanosensing modulates the expression and distribution of transcription factors in Schwann cells
Bioengineering & Transla Med 7(1) (Sep 13, 2021)
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Cumino, Andrey V. Cybulsky, Mark J. Czaja, Stanislaw J. Czuczwar, Stefania D’Adamo, Marcello D’Amelio, Daniela D’Arcangelo, Andrew C. D’Lugos, Gabriella D’Orazi, James A. da Silva, Hormos Salimi Dafsari, Ruben K. Dagda, Yasin Dagdas, Maria Daglia, Xiaoxia Dai, Yun Dai, Yuyuan Dai, Jessica Dal Col, Paul Dalhaimer, Luisa Dalla Valle, Tobias Dallenga, Guillaume Dalmasso, Markus Damme, Ilaria Dando, Nico P. Dantuma, April L. Darling, Hiranmoy Das, Srinivasan Dasarathy, Santosh K. Dasari, Srikanta Dash, Oliver Daumke, Adrian N. Dauphinee, Jeffrey S. Davies, Valeria A. Dávila, Roger J. Davis, Tanja Davis, Sharadha Dayalan Naidu, Francesca De Amicis, Karolien De Bosscher, Francesca De Felice, Lucia De Franceschi, Chiara De Leonibus, Mayara G. de Mattos Barbosa, Guido R.Y. De Meyer, Angelo De Milito, Cosimo De Nunzio, Clara De Palma, Mauro De Santi, Claudio De Virgilio, Daniela De Zio, Jayanta Debnath, Brian J. DeBosch, Jean-Paul Decuypere, Mark A. Deehan, Gianluca Deflorian, James DeGregori, Benjamin Dehay, Gabriel Del Rio, Joe R. Delaney, Lea M. D. Delbridge, Elizabeth Delorme-Axford, M. Victoria Delpino, Francesca Demarchi, Vilma Dembitz, Nicholas D. Demers, Hongbin Deng, Zhiqiang Deng, Joern Dengjel, Paul Dent, Donna Denton, Melvin L. DePamphilis, Channing J. Der, Vojo Deretic, Albert Descoteaux, Laura Devis, Sushil Devkota, Olivier Devuyst, Grant Dewson, Mahendiran Dharmasivam, Rohan Dhiman, Diego di Bernardo, Manlio Di Cristina, Fabio Di Domenico, Pietro Di Fazio, Alessio Di Fonzo, Giovanni Di Guardo, Gianni M. Di Guglielmo, Luca Di Leo, Chiara Di Malta, Alessia Di Nardo, Martina Di Rienzo, Federica Di Sano, George Diallinas, Jiajie Diao, Guillermo Diaz-Araya, Inés Díaz-Laviada, Jared M. Dickinson, Marc Diederich, Mélanie Dieudé, Ivan Dikic, Shiping Ding, Wen-Xing Ding, Luciana Dini, Jelena Dinić, Miroslav Dinic, Albena T. Dinkova-Kostova, Marc S. Dionne, Jörg H.W. Distler, Abhinav Diwan, Ian M.C. Dixon, Mojgan Djavaheri-Mergny, Ina Dobrinski, Oxana Dobrovinskaya, Radek Dobrowolski, Renwick C.J. Dobson, Jelena Đokić, Serap Dokmeci Emre, Massimo Donadelli, Bo Dong, Xiaonan Dong, Zhiwu Dong, Gerald W. Dorn, Volker Dotsch, Huan Dou, Juan Dou, Moataz Dowaidar, Sami Dridi, Liat Drucker, Ailian Du, Caigan Du, Guangwei Du, Hai-Ning Du, Li-Lin Du, André du Toit, Shao-Bin Duan, Xiaoqiong Duan, Sónia P. Duarte, Anna Dubrovska, Elaine A. Dunlop, Nicolas Dupont, Raúl V. Durán, Bilikere S. Dwarakanath, Sergey A. Dyshlovoy, Darius Ebrahimi-Fakhari, Leopold Eckhart, Charles L. Edelstein, Thomas Efferth, Eftekhar Eftekharpour, Ludwig Eichinger, Nabil Eid, Tobias Eisenberg, N. Tony Eissa, Sanaa Eissa, Miriam Ejarque, Abdeljabar El Andaloussi, Nazira El-Hage, Shahenda El-Naggar, Anna Maria Eleuteri, Eman S. El-Shafey, Mohamed Elgendy, Aristides G. Eliopoulos, María M. Elizalde, Philip M. Elks, Hans-Peter Elsasser, Eslam S. Elsherbiny, Brooke M. Emerling, N. C. Tolga Emre, Christina H. Eng, Nikolai Engedal, Anna-Mart Engelbrecht, Agnete S.T. Engelsen, Jorrit M. Enserink, Ricardo Escalante, Audrey Esclatine, Mafalda Escobar-Henriques, Eeva-Liisa Eskelinen, Lucile Espert, Makandjou-Ola Eusebio, Gemma Fabrias, Cinzia Fabrizi, Antonio Facchiano, Francesco Facchiano, Bengt Fadeel, Claudio Fader, Alex C. Faesen, W. Douglas Fairlie, Alberto Falcó, Bjorn H. Falkenburger, Daping Fan, Jie Fan, Yanbo Fan, Evandro F. Fang, Yanshan Fang, Yognqi Fang, Manolis Fanto, Tamar Farfel-Becker, Mathias Faure, Gholamreza Fazeli, Anthony O. Fedele, Arthur M. Feldman, Du Feng, Jiachun Feng, Lifeng Feng, Yibin Feng, Yuchen Feng, Wei Feng, Thais Fenz Araujo, Thomas A. Ferguson, Álvaro F. Fernández, Jose C. Fernandez-Checa, Sonia Fernández-Veledo, Alisdair R. Fernie, Anthony W. Ferrante, Alessandra Ferraresi, Merari F. Ferrari, Julio C.B. Ferreira, Susan Ferro-Novick, Antonio Figueras, Riccardo Filadi, Nicoletta Filigheddu, Eduardo Filippi-Chiela, Giuseppe Filomeni, Gian Maria Fimia, Vittorio Fineschi, Francesca Finetti, Steven Finkbeiner, Edward A. Fisher, Paul B. Fisher, Flavio Flamigni, Steven J. Fliesler, Trude H. Flo, Ida Florance, Oliver Florey, Tullio Florio, Erika Fodor, Carlo Follo, Edward A. Fon, Antonella Forlino, Francesco Fornai, Paola Fortini, Anna Fracassi, Alessandro Fraldi, Brunella Franco, Rodrigo Franco, Flavia Franconi, Lisa B. Frankel, Scott L. Friedman, Leopold F. Fröhlich, Gema Frühbeck, Jose M. Fuentes, Yukio Fujiki, Naonobu Fujita, Yuuki Fujiwara, Mitsunori Fukuda, Simone Fulda, Luc Furic, Norihiko Furuya, Carmela Fusco, Michaela U. Gack, Lidia Gaffke, Sehamuddin Galadari, Alessia Galasso, Maria F. Galindo, Sachith Gallolu Kankanamalage, Lorenzo Galluzzi, Vincent Galy, Noor Gammoh, Boyi Gan, Ian G. Ganley, Feng Gao, Hui Gao, Minghui Gao, Ping Gao, Shou-Jiang Gao, Wentao Gao, Xiaobo Gao, Ana Garcera, Maria Noé Garcia, Verónica E. Garcia, Francisco García-Del Portillo, Vega Garcia-Escudero, Aracely Garcia-Garcia, Marina Garcia-Macia, Diana García-Moreno, Carmen Garcia-Ruiz, Patricia García-Sanz, Abhishek D. Garg, Ricardo Gargini, Tina Garofalo, Robert F. Garry, Nils C. Gassen, Damian Gatica, Liang Ge, Wanzhong Ge, Ruth Geiss-Friedlander, Cecilia Gelfi, Pascal Genschik, Ian E. Gentle, Valeria Gerbino, Christoph Gerhardt, Kyla Germain, Marc Germain, David A. Gewirtz, Elham Ghasemipour Afshar, Saeid Ghavami, Alessandra Ghigo, Manosij Ghosh, Georgios Giamas, Claudia Giampietri, Alexandra Giatromanolaki, Gary E. Gibson, Spencer B. Gibson, Vanessa Ginet, Edward Giniger, Carlotta Giorgi, Henrique Girao, Stephen E. Girardin, Mridhula Giridharan, Sandy Giuliano, Cecilia Giulivi, Sylvie Giuriato, Julien Giustiniani, Alexander Gluschko, Veit Goder, Alexander Goginashvili, Jakub Golab, David C. Goldstone, Anna Golebiewska, Luciana R. Gomes, Rodrigo Gomez, Rubén Gómez-Sánchez, Maria Catalina Gomez-Puerto, Raquel Gomez-Sintes, Qingqiu Gong, Felix M. Goni, Javier González-Gallego, Tomas Gonzalez-Hernandez, Rosa A. Gonzalez-Polo, Jose A. Gonzalez-Reyes, Patricia González-Rodríguez, Ing Swie Goping, Marina S. Gorbatyuk, Nikolai V. Gorbunov, Kıvanç Görgülü, Roxana M. Gorojod, Sharon M. Gorski, Sandro Goruppi, Cecilia Gotor, Roberta A. Gottlieb, Illana Gozes, Devrim Gozuacik, Martin Graef, Markus H. Gräler, Veronica Granatiero, Daniel Grasso, Joshua P. Gray, Douglas R. Green, Alexander Greenhough, Stephen L. Gregory, Edward F. Griffin, Mark W. Grinstaff, Frederic Gros, Charles Grose, Angelina S. Gross, Florian Gruber, Paolo Grumati, Tilman Grune, Xueyan Gu, Jun-Lin Guan, Carlos M. Guardia, Kishore Guda, Flora Guerra, Consuelo Guerri, Prasun Guha, Carlos Guillén, Shashi Gujar, Anna Gukovskaya, Ilya Gukovsky, Jan Gunst, Andreas Günther, Anyonya R. Guntur, Chuanyong Guo, Chun Guo, Hongqing Guo, Lian-Wang Guo, Ming Guo, Pawan Gupta, Shashi Kumar Gupta, Swapnil Gupta, Veer Bala Gupta, Vivek Gupta, Asa B. Gustafsson, David D. Gutterman, Ranjitha H.B., Annakaisa Haapasalo, James E. Haber, Aleksandra Hać, Shinji Hadano, Anders J. Hafrén, Mansour Haidar, Belinda S. Hall, Gunnel Halldén, Anne Hamacher-Brady, Andrea Hamann, Maho Hamasaki, Weidong Han, Malene Hansen, Phyllis I.  Hanson, Zijian Hao, Masaru Harada, Ljubica Harhaji-Trajkovic, Nirmala Hariharan, Nigil Haroon, James Harris, Takafumi Hasegawa, Noor Hasima Nagoor, Jeffrey A. Haspel, Volker Haucke, Wayne D. Hawkins, Bruce A. Hay, Cole M. Haynes, Soren B. Hayrabedyan, Thomas S. Hays, Congcong He, Qin He, Rong-Rong He, You-Wen He, Yu-Ying He, Yasser Heakal, Alexander M. Heberle, J. Fielding Hejtmancik, Gudmundur Vignir  Helgason, Vanessa Henkel, Marc Herb, Alexander Hergovich, Anna Herman-Antosiewicz, Agustín Hernández, Carlos Hernandez, Sergio Hernandez-Diaz, Virginia Hernandez-Gea, Amaury Herpin, Judit Herreros, Javier H. Hervás, Daniel Hesselson, Claudio Hetz, Volker T. Heussler, Yujiro Higuchi, Sabine Hilfiker, Joseph A. Hill, William S. Hlavacek, Emmanuel A. Ho, Idy H.T. Ho, Philip Wing-Lok Ho, Shu-Leong Ho, Wan Yun Ho, G. Aaron Hobbs, Mark Hochstrasser, Peter H.M. Hoet, Daniel Hofius, Paul Hofman, Annika Höhn, Carina I. Holmberg, Jose R. Hombrebueno, Chang-Won Hong, Yi-Ren Hong, Lora V. Hooper, Thorsten Hoppe, Rastislav Horos, Yujin Hoshida, I-Lun Hsin, Hsin-Yun Hsu, Bing Hu, Dong Hu, Li-Fang Hu, Ming Chang Hu, Ronggui Hu, Wei Hu, Yu-Chen Hu, Zhuo-Wei Hu, Fang Hua, Jinlian Hua, Yingqi Hua, Chongmin Huan, Canhua Huang, Chuanshu Huang, Chuanxin Huang, Chunling Huang, Haishan Huang, Kun Huang, Michael L.H. Huang, Rui Huang, Shan Huang, Tianzhi Huang, Xing Huang, Yuxiang Jack Huang, Tobias B. Huber, Virginie Hubert, Christian A. Hubner, Stephanie M. Hughes, William E. Hughes, Magali Humbert, Gerhard Hummer, James H. Hurley, Sabah Hussain, Salik Hussain, Patrick J. Hussey, Martina Hutabarat, Hui-Yun Hwang, Seungmin Hwang, Antonio Ieni, Fumiyo Ikeda, Yusuke Imagawa, Yuzuru Imai, Carol Imbriano, Masaya Imoto, Denise M. Inman, Ken Inoki, Juan Iovanna, Renato V. Iozzo, Giuseppe Ippolito, Javier E. Irazoqui, Pablo Iribarren, Mohd Ishaq, Makoto Ishikawa, Nestor Ishimwe, Ciro Isidoro, Nahed Ismail, Shohreh Issazadeh-Navikas, Eisuke Itakura, Daisuke Ito, Davor Ivankovic, Saška Ivanova, Anand Krishnan V. Iyer, José M. Izquierdo, Masanori Izumi, Marja Jäättelä, Majid Sakhi Jabir, William T. Jackson, Nadia Jacobo-Herrera, Anne-Claire Jacomin, Elise Jacquin, Pooja Jadiya, Hartmut Jaeschke, Chinnaswamy Jagannath, Arjen J. Jakobi, Johan Jakobsson, Bassam Janji, Pidder Jansen-Dürr, Patric J. Jansson, Jonathan Jantsch, Sławomir Januszewski, Alagie Jassey, Steve Jean, Hélène Jeltsch-David, Pavla Jendelova, Andreas Jenny, Thomas E. Jensen, Niels Jessen, Jenna L. Jewell, Jing Ji, Lijun Jia, Rui Jia, Liwen Jiang, Qing Jiang, Richeng Jiang, Teng Jiang, Xuejun Jiang, Yu Jiang, Maria Jimenez-Sanchez, Eun-Jung Jin, Fengyan Jin, Hongchuan Jin, Li Jin, Luqi Jin, Meiyan Jin, Si Jin, Eun-Kyeong Jo, Carine Joffre, Terje Johansen, Gail V.W. Johnson, Simon A. Johnston, Eija Jokitalo, Mohit Kumar Jolly, Leo A.B. Joosten, Joaquin Jordan, Bertrand Joseph, Dianwen Ju, Jeong-Sun Ju, Jingfang Ju, Esmeralda Juárez, Delphine Judith, Gábor Juhász, Youngsoo Jun, Chang Hwa Jung, Sung-Chul Jung, Yong Keun Jung, Heinz Jungbluth, Johannes Jungverdorben, Steffen Just, Kai Kaarniranta, Allen Kaasik, Tomohiro Kabuta, Daniel Kaganovich, Alon Kahana, Renate Kain, Shinjo Kajimura, Maria Kalamvoki, Manjula Kalia, Danuta S. Kalinowski, Nina Kaludercic, Ioanna Kalvari, Joanna Kaminska, Vitaliy O. Kaminskyy, Hiromitsu Kanamori, Keizo Kanasaki, Chanhee Kang, Rui Kang, Sang Sun Kang, Senthilvelrajan Kaniyappan, Tomotake Kanki, Thirumala-Devi Kanneganti, Anumantha G. Kanthasamy, Arthi Kanthasamy, Marc Kantorow, Orsolya Kapuy, Michalis V. Karamouzis, Md. Razaul Karim, Parimal Karmakar, Rajesh G. Katare, Masaru Kato, Stefan H.E. Kaufmann, Anu Kauppinen, Gur P. Kaushal, Susmita Kaushik, Kiyoshi Kawasaki, Kemal Kazan, Po-Yuan Ke, Damien J. Keating, Ursula Keber, John H. Kehrl, Kate E. Keller, Christian W. Keller, Jongsook Kim Kemper, Candia M. Kenific, Oliver Kepp, Stephanie Kermorgant, Andreas Kern, Robin Ketteler, Tom G. Keulers, Boris Khalfin, Hany Khalil, Bilon Khambu, Shahid Y. Khan, Vinoth Kumar Megraj Khandelwal, Rekha Khandia, Widuri Kho, Noopur V. Khobrekar, Sataree Khuansuwan, Mukhran Khundadze, Samuel A. Killackey, Dasol Kim, Deok Ryong Kim, Do-Hyung Kim, Dong-Eun Kim, Eun Young Kim, Eun-Kyoung Kim, Hak-Rim Kim, Hee-Sik Kim, Hyung-Ryong Kim, Jeong Hun Kim, Jin Kyung Kim, Jin-Hoi Kim, Joungmok Kim, Ju Hwan Kim, Keun Il Kim, Peter K. Kim, Seong-Jun Kim, Scot R. Kimball, Adi Kimchi, Alec C. Kimmelman, Tomonori Kimura, Matthew A. King, Kerri J. Kinghorn, Conan G. Kinsey, Vladimir Kirkin, Lorrie A. Kirshenbaum, Sergey L. Kiselev, Shuji Kishi, Katsuhiko Kitamoto, Yasushi Kitaoka, Kaio Kitazato, Richard N. Kitsis, Josef T. Kittler, Ole Kjaerulff, Peter S. Klein, Thomas Klopstock, Jochen Klucken, Helene Knævelsrud, Roland L. Knorr, Ben C.B. Ko, Fred Ko, Jiunn-Liang Ko, Hotaka Kobayashi, Satoru Kobayashi, Ina Koch, Jan C. Koch, Ulrich Koenig, Donat Kögel, Young Ho Koh, Masato Koike, Sepp D. Kohlwein, Nur M. Kocaturk, Masaaki Komatsu, Jeannette König, Toru Kono, Benjamin T. Kopp, Tamas Korcsmaros, Gözde Korkmaz, Viktor I. Korolchuk, Mónica Suárez Korsnes, Ali Koskela, Janaiah Kota, Yaichiro Kotake, Monica L. Kotler, Yanjun Kou, Michael I. Koukourakis, Evangelos Koustas, Attila L. Kovacs, Tibor Kovács, Daisuke Koya, Tomohiro Kozako, Claudine Kraft, Dimitri Krainc, Helmut Krämer, Anna D. Krasnodembskaya, Carole Kretz-Remy, Guido Kroemer, Nicholas T. Ktistakis, Kazuyuki Kuchitsu, Sabine Kuenen, Lars Kuerschner, Thomas Kukar, Ajay Kumar, Ashok Kumar, Deepak Kumar, Dhiraj Kumar, Sharad Kumar, Shinji Kume, Caroline Kumsta, Chanakya N. Kundu, Mondira Kundu, Ajaikumar B. Kunnumakkara, Lukasz Kurgan, Tatiana G. Kutateladze, Ozlem Kutlu, SeongAe Kwak, Ho Jeong Kwon, Taeg Kyu Kwon, Yong Tae Kwon, Irene Kyrmizi, Albert La Spada, Patrick Labonté, Sylvain Ladoire, Ilaria Laface, Frank Lafont, Diane C. Lagace, Vikramjit Lahiri, Zhibing Lai, Angela S. Laird, Aparna Lakkaraju, Trond Lamark, Sheng-Hui Lan, Ane Landajuela, Darius J. R. Lane, Jon D. Lane, Charles H. Lang, Carsten Lange, Ülo Langel, Rupert Langer, Pierre Lapaquette, Jocelyn Laporte, Nicholas F. LaRusso, Isabel Lastres-Becker, Wilson Chun Yu Lau, Gordon W. Laurie, Sergio Lavandero, Betty Yuen Kwan Law, Helen Ka-wai Law, Rob Layfield, Weidong Le, Herve Le Stunff, Alexandre Y. Leary, Jean-Jacques Lebrun, Lionel Y.W. Leck, Jean-Philippe Leduc-Gaudet, Changwook Lee, Chung-Pei Lee, Da-Hye Lee, Edward B. Lee, Erinna F. Lee, Gyun Min Lee, He-Jin Lee, Heung Kyu Lee, Jae Man Lee, Jason S. Lee, Jin-A Lee, Joo-Yong Lee, Jun Hee Lee, Michael Lee, Min Goo Lee, Min Jae Lee, Myung-Shik Lee, Sang Yoon Lee, Seung-Jae Lee, Stella Y. Lee, Sung Bae Lee, Won Hee Lee, Ying-Ray Lee, Yong-ho Lee, Youngil Lee, Christophe Lefebvre, Renaud Legouis, Yu L. Lei, Yuchen Lei, Sergey Leikin, Gerd Leitinger, Leticia Lemus, Shuilong Leng, Olivia Lenoir, Guido Lenz, Heinz Josef Lenz, Paola Lenzi, Yolanda León, Andréia M. Leopoldino, Christoph Leschczyk, Stina Leskelä, Elisabeth Letellier, Chi-Ting Leung, Po Sing Leung, Jeremy S. Leventhal, Beth Levine, Patrick A. Lewis, Klaus Ley, Bin Li, Da-Qiang Li, Jianming Li, Jing Li, Jiong Li, Ke Li, Liwu Li, Mei Li, Min Li, Min Li, Ming Li, Mingchuan Li, Pin-Lan Li, Ming-Qing Li, Qing Li, Sheng Li, Tiangang Li, Wei Li, Wenming Li, Xue Li, Yi-Ping Li, Yuan Li, Zhiqiang Li, Zhiyong Li, Zhiyuan Li, Jiqin Lian, Chengyu Liang, Qiangrong Liang, Weicheng Liang, Yongheng Liang, YongTian Liang, Guanghong Liao, Lujian Liao, Mingzhi Liao, Yung-Feng Liao, Mariangela Librizzi, Pearl P. Y. Lie, Mary A. Lilly, Hyunjung J. Lim, Thania R.R. Lima, Federica Limana, Chao Lin, Chih-Wen Lin, Dar-Shong Lin, Fu-Cheng Lin, Jiandie D. Lin, Kurt M. Lin, Kwang-Huei Lin, Liang-Tzung Lin, Pei-Hui Lin, Qiong Lin, Shaofeng Lin, Su-Ju Lin, Wenyu Lin, Xueying Lin, Yao-Xin Lin, Yee-Shin Lin, Rafael Linden, Paula Lindner, Shuo-Chien Ling, Paul Lingor, Amelia K. Linnemann, Yih-Cherng Liou, Marta M. Lipinski, Saška Lipovšek, Vitor A. Lira, Natalia Lisiak, Paloma B. Liton, Chao Liu, Ching-Hsuan Liu, Chun-Feng Liu, Cui Hua Liu, Fang Liu, Hao Liu, Hsiao-Sheng Liu, Hua-feng Liu, Huifang Liu, Jia Liu, Jing Liu, Julia Liu, Leyuan Liu, Longhua Liu, Meilian Liu, Qin Liu, Wei Liu, Wende Liu, Xiao-Hong Liu, Xiaodong Liu, Xingguo Liu, Xu Liu, Xuedong Liu, Yanfen Liu, Yang Liu, Yang Liu, Yueyang Liu, Yule Liu, J. Andrew Livingston, Gerard Lizard, Jose M. Lizcano, Senka Ljubojevic-Holzer, Matilde E. LLeonart, David Llobet-Navàs, Alicia Llorente, Chih Hung Lo, Damián Lobato-Márquez, Qi Long, Yun Chau Long, Ben Loos, Julia A. Loos, Manuela G. López, Guillermo López-Doménech, José Antonio López-Guerrero, Ana T. López-Jiménez, Óscar López-Pérez, Israel López-Valero, Magdalena J. Lorenowicz, Mar Lorente, Peter Lorincz, Laura Lossi, Sophie Lotersztajn, Penny E. Lovat, Jonathan F. Lovell, Alenka Lovy, Péter Lőw, Guang Lu, Haocheng Lu, Jia-Hong Lu, Jin-Jian Lu, Mengji Lu, Shuyan Lu, Alessandro Luciani, John M. Lucocq, Paula Ludovico, Micah A. Luftig, Morten Luhr, Diego Luis-Ravelo, Julian J. Lum, Liany Luna-Dulcey, Anders H. Lund, Viktor K. Lund, Jan D. Lünemann, Patrick Lüningschrör, Honglin Luo, Rongcan Luo, Shouqing Luo, Zhi Luo, Claudio Luparello, Bernhard Lüscher, Luan Luu, Alex Lyakhovich, Konstantin G. Lyamzaev, Alf Håkon Lystad, Lyubomyr Lytvynchuk, Alvin C. Ma, Changle Ma, Mengxiao Ma, Ning-Fang Ma, Quan-Hong Ma, Xinliang Ma, Yueyun Ma, Zhenyi Ma, Ormond A. MacDougald, Fernando Macian, Gustavo C. MacIntosh, Jeffrey P. MacKeigan, Kay F. Macleod, Sandra Maday, Frank Madeo, Muniswamy Madesh, Tobias Madl, Julio Madrigal-Matute, Akiko Maeda, Yasuhiro Maejima, Marta Magarinos, Poornima Mahavadi, Emiliano Maiani, Kenneth Maiese, Panchanan Maiti, Maria Chiara Maiuri, Barbara Majello, Michael B. Major, Elena Makareeva, Fayaz Malik, Karthik Mallilankaraman, Walter Malorni, Alina Maloyan, Najiba Mammadova, Gene Chi Wai Man, Federico Manai, Joseph D. Mancias, Eva-Maria Mandelkow, Michael A. Mandell, Angelo A. Manfredi, Masoud H. Manjili, Ravi Manjithaya, Patricio Manque, Bella B. Manshian, Raquel Manzano, Claudia Manzoni, Kai Mao, Cinzia Marchese, Sandrine Marchetti, Anna Maria Marconi, Fabrizio Marcucci, Stefania Mardente, Olga A. Mareninova, Marta Margeta, Muriel Mari, Sara Marinelli, Oliviero Marinelli, Guillermo Mariño, Sofia Mariotto, Richard S. Marshall, Mark R. Marten, Sascha Martens, Alexandre P.J. Martin, Katie R. Martin, Sara Martin, Shaun Martin, Adrián Martín-Segura, Miguel A. Martín-Acebes, Inmaculada Martin-Burriel, Marcos Martin-Rincon, Paloma Martin-Sanz, José A. Martina, Wim Martinet, Aitor Martinez, Ana Martinez, Jennifer Martinez, Moises Martinez Velazquez, Nuria Martinez-Lopez, Marta Martinez-Vicente, Daniel O. Martins, Joilson O. Martins, Waleska K. Martins, Tania Martins-Marques, Emanuele Marzetti, Shashank Masaldan, Celine Masclaux-Daubresse, Douglas G. Mashek, Valentina Massa, Lourdes Massieu, Glenn R. Masson, Laura Masuelli, Anatoliy I. Masyuk, Tetyana V. Masyuk, Paola Matarrese, Ander Matheu, Satoaki Matoba, Sachiko Matsuzaki, Pamela Mattar, Alessandro Matte, Domenico Mattoscio, José L. Mauriz, Mario Mauthe, Caroline Mauvezin, Emanual Maverakis, Paola Maycotte, Johanna Mayer, Gianluigi Mazzoccoli, Cristina Mazzoni, Joseph R. Mazzulli, Nami McCarty, Christine McDonald, Mitchell R. McGill, Sharon L. McKenna, BethAnn McLaughlin, Fionn McLoughlin, Mark A. McNiven, Thomas G. McWilliams, Fatima Mechta-Grigoriou, Tania Catarina Medeiros, Diego L. Medina, Lynn A. Megeney, Klara Megyeri, Maryam Mehrpour, Jawahar L. Mehta, Alfred J. Meijer, Annemarie H. Meijer, Jakob Mejlvang, Alicia Meléndez, Annette Melk, Gonen Memisoglu, Alexandrina F. Mendes, Delong Meng, Fei Meng, Tian Meng, Rubem Menna-Barreto, Manoj B. 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Yuan, Yanggang Yuan, Zengqiang Yuan, Jianbo Yue, Zhenyu Yue, Jeanho Yun, Raymond L. Yung, David N. Zacks, Gabriele Zaffagnini, Vanessa O. Zambelli, Isabella Zanella, Qun S. Zang, Sara Zanivan, Silvia Zappavigna, Pilar Zaragoza, Konstantinos S. Zarbalis, Amir Zarebkohan, Amira Zarrouk, Scott O. Zeitlin, Jialiu Zeng, Ju-deng Zeng, Eva Žerovnik, Lixuan Zhan, Bin Zhang, Donna D. Zhang, Hanlin Zhang, Hong Zhang, Hong Zhang, Honghe Zhang, Huafeng Zhang, Huaye Zhang, Hui Zhang, Hui-Ling Zhang, Jianbin Zhang, Jianhua Zhang, Jing-Pu Zhang, Kalin Y.B. Zhang, Leshuai W. Zhang, Lin Zhang, Lisheng Zhang, Lu Zhang, Luoying Zhang, Menghuan Zhang, Peng Zhang, Sheng Zhang, Wei Zhang, Xiangnan Zhang, Xiao-Wei Zhang, Xiaolei Zhang, Xiaoyan Zhang, Xin Zhang, Xinxin Zhang, Xu Dong Zhang, Yang Zhang, Yanjin Zhang, Yi Zhang, Ying-Dong Zhang, Yingmei Zhang, Yuan-Yuan Zhang, Yuchen Zhang, Zhe Zhang, Zhengguang Zhang, Zhibing Zhang, Zhihai Zhang, Zhiyong Zhang, Zili Zhang, Haobin Zhao, Lei Zhao, Shuang Zhao, Tongbiao Zhao, Xiao-Fan Zhao, Ying Zhao, Yongchao Zhao, Yongliang Zhao, Yuting Zhao, Guoping Zheng, Kai Zheng, Ling Zheng, Shizhong Zheng, Xi-Long Zheng, Yi Zheng, Zu-Guo Zheng, Boris Zhivotovsky, Qing Zhong, Ao Zhou, Ben Zhou, Cefan Zhou, Gang Zhou, Hao Zhou, Hong Zhou, Hongbo Zhou, Jie Zhou, Jing Zhou, Jing Zhou, Jiyong Zhou, Kailiang Zhou, Rongjia Zhou, Xu-Jie Zhou, Yanshuang Zhou, Yinghong Zhou, Yubin Zhou, Zheng-Yu Zhou, Zhou Zhou, Binglin Zhu, Changlian Zhu, Guo-Qing Zhu, Haining Zhu, Hongxin Zhu, Hua Zhu, Wei-Guo Zhu, Yanping Zhu, Yushan Zhu, Haixia Zhuang, Xiaohong Zhuang, Katarzyna Zientara-Rytter, Christine M. Zimmermann, Elena Ziviani, Teresa Zoladek, Wei-Xing Zong, Dmitry B. Zorov, Antonio Zorzano, Weiping Zou, Zhen Zou, Zhengzhi Zou, Steven Zuryn, Werner Zwerschke, Beate Brand-Saberi, X. Charlie Dong, Chandra Shekar Kenchappa, Zuguo Li, Yong Lin, Shigeru Oshima, Yueguang Rong, Judith C. Sluimer, Christina L. Stallings, Chun-Kit Tong
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1
Autophagy 17(1):1–382 (Mar 24, 2021)
DOI: 10.1080/15548627.2020.1797280

Marta Urbanska, Annemarie Lüdecke, Wilhelm J. Walter, Antoine M. van Oijen, Karl E. Duderstadt, Stefan Diez
Highly-parallel, microfluidics-based force spectroscopy on single motor proteins
Small 17(18) 2007388 (Mar 23, 2021)
DOI: 10.1002/smll.202007388

Felix Lansing, Jenna Hoersten, Frank Buchholz
Wie Designer-Rekombinasen Erbkrankheiten heilen könnten
Biospektrum 27(2):139–141 (Mar 23, 2021)
DOI: 10.1007/s12268-021-1549-9

Ben Newland, Heike Newland, Francesca Lorenzi, Dimitri Eigel, Petra B. Welzel, Dieter Fischer, Wenxin Wang, Uwe Freudenberg, Anne Rosser, Carsten Werner
Injectable Glycosaminoglycan-Based Cryogels from Well-Defined Microscale Templates for Local Growth Factor Delivery
ACS Chem. Neurosci. 12(7):1178–1188 (Mar 23, 2021)
DOI: 10.1021/acschemneuro.1c00005

Ping Liu, Weilin Lin, Robert Wieduwild, Russell Towers, Alvin K. Thomas, Markus Günther, Sarkhan Butdayev, Manja Wobus, Martin Bornhäuser, Yixin Zhang
Displaying Lipid Chains in a Peptide–Polysaccharide-Based Self-Assembled Hydrogel Network
Chemistry of Materials (Mar 21, 2021)
DOI: 10.1021/acs.chemmater.0c04105

Laura Mediani, Francesco Antoniani, Veronica Galli, Jonathan Vinet, Arianna Dorotea Carrà, Ilaria Bigi, Vadreenath Tripathy, Tatiana Tiago, Marco Cimino, Giuseppina Leo, Triana Amen, Daniel Kaganovich, Cristina Cereda, Orietta Pansarasa, Jessica Mandrioli, Priyanka Tripathi, Dirk Troost, Eleonora Aronica, Johannes Buchner, Anand Goswami, Jared Sterneckert, Simon Alberti, Serena Carra
Hsp90‐mediated regulation of DYRK3 couples stress granule disassembly and growth via mTORC1 signaling
EMBO Reports 22(5) (Mar 19, 2021)
DOI: 10.15252/embr.202051740

Madhumalar Subramanian, Charlotte Kielar, Satoru Tsushima, Karim Fahmy, Jana Oertel
DNA-Mediated Stack Formation of Nanodiscs
Molecules 26(6):1647 (Mar 16, 2021)
DOI: 10.3390/molecules26061647

Jose Negrete Jr, Iván M Lengyel, Laurel Rohde, Ravi A Desai, Andrew C Oates, Frank Jülicher
Theory of Time Delayed Genetic Oscillations with External Noisy Regulation
New J. Phys. 23, 033030, (Mar 15, 2021)
DOI: 10.1088/1367-2630/abd80b

Dimitri Eigel, Carsten Werner, Ben Newland
Cryogel biomaterials for neuroscience applications
Neurochemistry International 147:105012 (Mar 14, 2021)
DOI: 10.1016/j.neuint.2021.105012

Ansarullah, Chirag Jain, Fataneh Fathi Far, Sarah Homberg, Katharina Wißmiller, Felizitas Gräfin von Hahn, Aurelia Raducanu, Silvia Schirge, Michael Sterr, Sara Bilekova, Johanna Siehler, Julius Wiener, Lena Oppenländer, Amir Morshedi, Aimée Bastidas-Ponce, Gustav Collden, Martin Irmler, Johannes Beckers, Annette Feuchtinger, Michal Grzybek, Christin Ahlbrecht, Regina Feederle, Oliver Plettenburg, Timo D. Müller, Matthias Meier, Matthias H. Tschöp, Ünal Coskun, Heiko Lickert
Author Correction: Inceptor counteracts insulin signalling in β-cells to control glycaemia
Nature 592(7852):E1–E1 (Mar 12, 2021)
DOI: 10.1038/s41586-021-03347-z

Marko Popović, Valentin Druelle, Natalie A Dye, Frank Jülicher, Matthieu Wyart
Inferring the flow properties of epithelial tissues from their geometry
New J. Phys. 23 033004, (Mar 10, 2021)
DOI: 10.1088/1367-2630/abcbc7

David Weik, Richard Nauber, Christian Kupsch, Lars Buttner, Jurgen Czarske
Uncertainty Quantification of Ultrasound Image Velocimetry for Liquid Metal Flow Mapping
IEEE Trans. Instrum. Meas. 70:1–11 (Mar 10, 2021)
DOI: 10.1109/tim.2021.3065433

Andreas Lackner, Robert Sehlke, Marius Garmhausen, Giuliano Giuseppe Stirparo, Michelle Huth, Fabian Titz‐Teixeira, Petra van der Lelij, Julia Ramesmayer, Henry F Thomas, Meryem Ralser, Laura Santini, Elena Galimberti, Mihail Sarov, A Francis Stewart, Austin Smith, Andreas Beyer, Martin Leeb
Cooperative genetic networks drive embryonic stem cell transition from naïve to formative pluripotency
The EMBO Journal 40(8) (Mar 9, 2021)
DOI: 10.15252/embj.2020105776

T. Distler, L. Kretzschmar, D. Schneidereit, S. Girardo, R. Goswami, O. Friedrich, R. Detsch, J. Guck, A. R. Boccaccini, S. Budday
Mechanical properties of cell- and microgel bead-laden oxidized alginate-gelatin hydrogels
Biomater. Sci. 9(8):3051–3068 (Mar 5, 2021)
DOI: 10.1039/d0bm02117b

Benedikt Krug, Nektarios Koukourakis, Jürgen W. Czarske
Advancing impulsive stimulated Brillouin microscopy using a femtosecond laser for biomechanics
Optical Elastography and Tissue Biomechanics VIII (Mar 4, 2021)
DOI: 10.1117/12.2577497

Felix Schmieder, Rouhollah Habibey, Volker Busskamp, Lars Büttner, Jürgen W. Czarske
Correlation analysis of human iPSC-derived neuronal networks using holographic single cell and full field stimulation
Optical Techniques in Neurosurgery, Neurophotonics, and Optogenetics (Mar 4, 2021)
DOI: 10.1117/12.2583240

Rafał Bazan, Adam Schröfel, Ewa Joachimiak, Martyna Poprzeczko, Gaia Pigino, Dorota Wloga
Ccdc113/Ccdc96 complex, a novel regulator of ciliary beating that connects radial spoke 3 to dynein g and the nexin link
PLoS Genet 17(3):e1009388 (Mar 4, 2021)
DOI: 10.1371/journal.pgen.1009388

Madeline M Keenen, David Brown, Lucy D Brennan, Roman Renger, Harrison Khoo, Christopher R Carlson, Bo Huang, Stephan W Grill, Geeta J Narlikar, Sy Redding
HP1 proteins compact DNA into mechanically and positionally stable phase separated domains
eLife 10:e64563. (Mar 4, 2021)
DOI: 10.7554/eLife.64563

Jiawei Sun, Nils Dunkelberg, Nektarios Koukourakis, Robert Kuschmierz, Juergen Czarske, Jochen Guck
Multi-dimensional cell-rotation using multi-core fibers and wavefront shaping
Quantitative Phase Imaging VII (Mar 3, 2021)
DOI: 10.1117/12.2576224

Malte Schröder, Andreas Bossert, Moritz Kersting, Sebastian Aeffner, Justin Coetzee, Marc Timme, Jan Schlüter
COVID-19 in South Africa: outbreak despite interventions
Sci Rep 11(1), 4956 (Mar 2, 2021)
DOI: 10.1038/s41598-021-84487-0

Lennart Hilbert, Yuko Sato, Ksenia Kuznetsova, Tommaso Bianucci, Hiroshi Kimura, Frank Jülicher, Alf Honigmann, Vasily Zaburdaev, Nadine L. Vastenhouw
Transcription Organizes Euchromatin via Microphase Separation
Nat Commun 12, 1360, (Mar 1, 2021)
DOI: 10.1038/s41467-021-21589-3

Suryanarayana Maddu, Dominik Sturm, Bevan L. Cheeseman, Christian L. Müller, Ivo F. Sbalzarini
Learning Computable Models From Data
WCCM-ECCOMAS2020 (Mar 2021)
DOI: 10.23967/wccm-eccomas.2020.190

Sebastian Burgmann, Michael Dues, Beawer Barwari, Jonas Steinbock, Lars Büttner, Jürgen Czarske, Uwe Janoske
Flow measurements in the wake of an adhering and oscillating droplet using laser-Doppler velocity profile sensor
Exp Fluids 62(3), 47 (Mar 1, 2021)
DOI: 10.1007/s00348-021-03148-0

Szabolcs Horvát, Adeeba Fathima, Stefan Görlich, Michael Schlierf, Carl D. Modes, Nils Kröger
Computational analysis of the effects of nitrogen source and sin1 knockout on biosilica morphology in the model diatom Thalassiosira pseudonana
Discov Mater 1(1), 8 (Mar 1, 2021)
DOI: 10.1007/s43939-021-00008-w

Anne Seifert, Hauke Drechsler, Julia Japtok, Till Korten, Stefan Diez, Andreas Hermann
The ALS-Associated FUS (P525L) Variant Does Not Directly Interfere with Microtubule-Dependent Kinesin-1 Motility
Int J Mol Sci 22(5):2422 (Feb 28, 2021)
DOI: 10.3390/ijms22052422

Sebastian Keil, Mansi Gupta, Michael Brand, Franziska Knopf
Heparan sulfate proteoglycan expression in the regenerating zebrafish fin
Developmental Dynamics 250(9):1368–1380 (Feb 27, 2021)
DOI: 10.1002/dvdy.321

Sundary Sormendi, Mathieu Deygas, Anupam Sinha, Mathilde Bernard, Anja Krüger, Ioannis Kourtzelis, Gregoire Le Lay, Pablo J. Sáez, Michael Gerlach, Kristin Franke, Ana Meneses, Martin Kräter, Alessandra Palladini, Jochen Guck, Ünal Coskun, Triantafyllos Chavakis, Pablo Vargas, Ben Wielockx
HIF2α is a direct regulator of neutrophil motility
Blood 137(24):3416–3427 (Feb 23, 2021)
DOI: 10.1182/blood.2020007505

Zoe H. Davis, Laura Mediani, Francesco Antoniani, Jonathan Vinet, Shuangxi Li, Simon Alberti, Bingwei Lu, Alex S. Holehouse, Serena Carra, Onn Brandman
Protein products of nonstop mRNA disrupt nucleolar homeostasis
Cell Stress and Chaperones 26(3):549–561 (Feb 22, 2021)
DOI: 10.1007/s12192-021-01200-w

Stefan Hans, Daniela Zöller, Juliane Hammer, Johanna Stucke, Sandra Spieß, Gokul Kesavan, Volker Kroehne, Juan Sebastian Eguiguren, Diana Ezhkova, Andreas Petzold, Andreas Dahl, Michael Brand
Cre-Controlled CRISPR mutagenesis provides fast and easy conditional gene inactivation in zebrafish
Nature Communications volume 12, Article number: 1125 (Feb 18, 2021)
DOI: 10.1038/s41467-021-21427-6

Anders S Hansen, Christoph Zechner
Promoters adopt distinct dynamic manifestations depending on transcription factor context
Mol Syst Biol 17(2):e9821 (Feb 17, 2021)
DOI: 10.15252/msb.20209821

Georg Krainer, Timothy J. Welsh, Jerelle A. Joseph, Jorge R. Espinosa, Sina Wittmann, Ella de Csilléry, Akshay Sridhar, Zenon Toprakcioglu, Giedre Gudiškytė, Magdalena A. Czekalska, William E. Arter, Jordina Guillén-Boixet, Titus M. Franzmann, Seema Qamar, Peter St George-Hyslop, Anthony A. Hyman, Rosana Collepardo-Guevara, Simon Alberti, Tuomas P. J. Knowles
Reentrant liquid condensate phase of proteins is stabilized by hydrophobic and non-ionic interactions
Nature Communications volume 12, 1085 (Feb 17, 2021)
DOI: 10.1038/s41467-021-21181-9

Dimitri Eigel, Romy Schuster, Max J. Männel, Julian Thiele, Martyna J. Panasiuk, Laura C. Andreae, Carmine Varricchio, Andrea Brancale, Petra B. Welzel, Wieland B. Huttner, Carsten Werner, Ben Newland, Katherine R. Long
Sulfonated cryogel scaffolds for focal delivery in ex-vivo brain tissue cultures
Biomaterials 271:120712 (Feb 10, 2021)
DOI: 10.1016/j.biomaterials.2021.120712

Ming Hu, Inês Cebola, Gaelle Carrat, Shuying Jiang, Sameena Nawaz, Amna Khamis, Mickaël Canouil, Philippe Froguel, Anke Schulte, Michele Solimena, Mark Ibberson, Piero Marchetti, Fabian L. Cardenas-Diaz, Paul J. Gadue, Benoit Hastoy, Leonardo Almeida-Souza, Harvey McMahon, Guy A. Rutter
Chromatin 3D interaction analysis of the STARD10 locus unveils FCHSD2 as a regulator of insulin secretion
Cell Reports 34(5):108703 (Feb 3, 2021)
DOI: 10.1016/j.celrep.2021.108703

Benjamin Russig, Mirco Salm, Stefan Gumhold
GPU-based Raycasting of Hermite Spline Tubes
2020 IEEE Visualization Conference (VIS) (Feb 2, 2021)
DOI: 10.1109/vis47514.2020.00012

Veronica Diez, Sofia Traikov, Kathrin Schmeisser, Akshay Kumar Das Adhikari, Teymuras Vakhtang Kurzchalia
Glycolate combats massive oxidative stress by restoring redox potential in Caenorhabditis elegans
Commun Biol 4(1), 151 (Feb 1, 2021)
DOI: 10.1038/s42003-021-01669-2

Sz Horvát, Carl D Modes
Connectedness matters: construction and exact random sampling of connected networks
J. Phys. Complex. 2(1):015008 (Jan 29, 2021)
DOI: 10.1088/2632-072x/abced5

Samhita P Banavar, Michael Trogdon, Brian Drawert, Tau-Mu Yi, Linda R Petzold, Otger Campàs*
Coordinating cell polarization and morphogenesis through mechanical feedback
PLoS computational biology 17 (1), e1007971 (Jan 28, 2021)
* corresponding author
DOI: 10.1371/journal.pcbi.1007971

Jonas Ahlers, Ellen M. Adams, Verian Bader, Simone Pezzotti, Konstanze F. Winklhofer, Jörg Tatzelt, Martina Havenith
The key role of solvent in condensation: Mapping water in liquid-liquid phase-separated FUS
Biophysical Journal 120(7):1266–1275 (Jan 28, 2021)
DOI: 10.1016/j.bpj.2021.01.019

James Giammona, Otger Campàs*
Physical constraints on early blastomere packings
PLoS Computational Biology 17 (1), e1007994 (Jan 26, 2021)
* corresponding author
DOI: 10.1371/journal.pcbi.1007994

Ingo Nitschke, Sebastian Reuther, Axel Voigt
Vorticity‐stream function approaches are inappropriate to solve the surface Navier‐Stokes equation on a torus
Proc Appl Math and Mech 20(1) (Jan 25, 2021)
DOI: 10.1002/pamm.202000006

Karl B. Hoffmann, Ivo F. Sbalzarini
A robustness measure for singular point and index estimation in discretized orientation and vector fields
Proc Appl Math and Mech 20(1) (Jan 25, 2021)
DOI: 10.1002/pamm.202000261

Sarita Hebbar, Malte Lehmann, Sarah Behrens, Catrin Hälsig, Weihua Leng, Michaela Yuan, Sylke Winkler, Elisabeth Knust
Mutations in the splicing regulator Prp31 lead to retinal degeneration in Drosophila
Biology Open 10(1) (Jan 25, 2021)
DOI: 10.1242/bio.052332

Srija Bhagavatula, Elisabeth Knust
A putative stem-loop structure in Drosophila crumbs is required for mRNA localisation in epithelia and germline cells
Journal of cell science 134 (2) (Jan 25, 2021)
DOI: 10.1242/jcs.236497

Ahmet Hazini, Babette Dieringer, Markian Pryshliak, Klaus-Peter Knoch, Lisanne Heimann, Beatrice Tolksdorf, Kathleen Pappritz, Muhammad El-Shafeey, Michele Solimena, Antje Beling, Jens Kurreck, Karin Klingel, Henry Fechner
miR-375- and miR-1-Regulated Coxsackievirus B3 Has No Pancreas and Heart Toxicity But Strong Antitumor Efficiency in Colorectal Carcinomas
Human Gene Therapy 32(3-4):216–230 (Jan 22, 2021)
DOI: 10.1089/hum.2020.228

Julia Sophie Pawlick, Marta Zuzic, Giovanni Pasquini, Anka Swiersy, Volker Busskamp
MiRNA Regulatory Functions in Photoreceptors
Front. Cell Dev. Biol. 8 (Jan 21, 2021)
DOI: 10.3389/fcell.2020.620249

Giovanni Pasquini, Jesus Eduardo Rojo Arias, Patrick Schäfer, Volker Busskamp
Automated methods for cell type annotation on scRNA-seq data
Computational and Structural Biotechnology Journal 19:961–969 (Jan 19, 2021)
DOI: 10.1016/j.csbj.2021.01.015

Richard Wetzel, Sandra Hauser, Weilin Lin, Peggy Berg, Carsten Werner, Jens Pietzsch, Gerd Kempermann, Yixin Zhang
Screening Arrays of Laminin Peptides on Modified Cellulose for Promotion of Adhesion of Primary Endothelial and Neural Precursor Cells
Advanced Biology 5(2) (Jan 15, 2021)
DOI: 10.1002/adbi.201900303

Lida Zoupi, Sam A. Booker, Dimitri Eigel, Carsten Werner, Peter C. Kind, Tara L. Spires-Jones, Ben Newland, Anna C. Williams
Selective vulnerability of inhibitory networks in multiple sclerosis
Acta Neuropathol 141(3):415–429 (Jan 15, 2021)
DOI: 10.1007/s00401-020-02258-z

Keisuke Ishihara, Franziska Decker, Paulo Caldas, James F. Pelletier, Martin Loose, Jan Brugués, Timothy J. Mitchison
Spatial variation of microtubule depolymerization in large asters
MBoC 32(9):869–879 (Jan 13, 2021)
DOI: 10.1091/mbc.e20-11-0723

Tim-Oliver Buchholz, Mangal Prakash, Deborah Schmidt, Alexander Krull, Florian Jug
DenoiSeg: Joint Denoising and Segmentation
Lecture Notes in Computer Science 324–337 (Jan 9, 2021)
DOI: 10.1007/978-3-030-66415-2_21

Vasiliki Tsata, Stephanie Möllmert, Christine Schweitzer, Julia Kolb, Conrad Möckel, Benjamin Böhm, Gonzalo Rosso, Christian Lange, Mathias Lesche, Juliane Hammer, Gokul Kesavan, Dimitris Beis, Jochen Guck, Michael Brand, Daniel Wehner
A switch in pdgfrb cell-derived ECM composition prevents inhibitory scarring and promotes axon regeneration in the zebrafish spinal cord
Developmental Cell 56(4):509–524.e9 (Jan 9, 2021)
DOI: 10.1016/j.devcel.2020.12.009

Sudarshan Gadadhar, Gonzalo Alvarez Viar, Jan Niklas Hansen, An Gong, Aleksandr Kostarev, Côme Ialy-Radio, Sophie Leboucher, Marjorie Whitfield, Ahmed Ziyyat, Aminata Touré, Luis Alvarez, Gaia Pigino, Carsten Janke
Tubulin glycylation controls axonemal dynein activity, flagellar beat, and male fertility
Science 371(6525) (Jan 7, 2021)
DOI: 10.1126/science.abd4914

Hui-Shun Kuan, Wolfram Pönisch, Frank Jülicher, Vasily Zaburdaev
Continuum Theory of Active Phase Separation in Cellular Aggregates
Phys. Rev. Lett. 126, 018102, (Jan 4, 2021)
DOI: 10.1103/PhysRevLett.126.018102

Jordi Comelles, Soumya Ss, Linjie Lu, Emilie Le Maout, S Anvitha, Guillaume Salbreux, Frank Jülicher, Mandar M Inamdar, Daniel Riveline
Epithelial Colonies In Vitro Elongate through Collective Effects
eLife 10:e57730, (Jan 4, 2021)
DOI: 10.7554/elife.57730

Benjamin Dalton, Ivo F. Sbalzarini, Itsuo Hanasaki
Fundamentals of the logarithmic measure for revealing multimodal diffusion
Biophys J, Art. No. (Jan 2021)
DOI: 10.1016/j.bpj.2021.01.001

Karl B. Hoffmann and Ivo F. Sbalzarini
Robustness of topological defects in discrete domains
Phys. Rev. E, 103:012602 (Jan 2021)
DOI: 10.1103/PhysRevE.103.012602

2020

217 publication(s) listed

Basusree Ghosh, Rudrarup Bose, T-Y. Dora Tang
Can coacervation unify disparate hypotheses in the origin of cellular life?
Current Opinion in Colloid & Interface Science 52:101415 (Dec 31, 2020)
DOI: 10.1016/j.cocis.2020.101415

Li Ding, Maciej Paszkowski-Rogacz, Jovan Mircetic, Debojyoti Chakraborty, Frank Buchholz
The Paf1 complex positively regulates enhancer activity in mouse embryonic stem cells
Life Sci. Alliance 4(3):e202000792 (Dec 29, 2020)
DOI: 10.26508/lsa.202000792

Gokul Kesavan, Florian Raible, Mansi Gupta, Anja Machate, Dilara Yilmaz, Michael Brand
Isthmin1, a secreted signaling protein, acts downstream of diverse embryonic patterning centers in development
Cell Tissue Res 383(3):987–1002 (Dec 28, 2020)
DOI: 10.1007/s00441-020-03318-2

Dahmann C, Classen AK
Charting the unknown currents of cellular flows and forces
Development, 147(24):dev186403. (Dec 21, 2020)
DOI: 10.1242/dev.186403

Kaushikaram Subramanian, Heike Petzold, Benjamin Seelbinder, Lena Hersemann, Ina Nüsslein, Moritz Kreysing
Optical plasticity of mammalian cells
Journal of Biophotonics 14(4) (Dec 21, 2020)
DOI: 10.1002/jbio.202000457

Johanna Grinat, Julian Heuberger, Ramon Oliveira Vidal, Neha Goveas, Frauke Kosel, Antoni Berenguer-Llergo, Andrea Kranz, Annika Wulf-Goldenberg, Diana Behrens, Bálint Melcher, Sascha Sauer, Michael Vieth, Eduard Batlle, A. Francis Stewart, Walter Birchmeier
The epigenetic regulator Mll1 is required for Wnt-driven intestinal tumorigenesis and cancer stemness
Nat Commun 11(1), 6422 (Dec 21, 2020)
DOI: 10.1038/s41467-020-20222-z

Elisa Maria Rieckhoff, Frederic Berndt, Maria Elsner, Stefan Golfier, Franziska Decker, Keisuke Ishihara, Jan Brugués
Spindle Scaling Is Governed by Cell Boundary Regulation of Microtubule Nucleation
Current Biology 30, 4973–4983 (Dec 21, 2020)
DOI: 10.1016/j.cub.2020.10.093

Vasiliki Tsata, Volker Kroehne, Daniel Wehner, Fabian Rost, Christian Lange, Cornelia Hoppe, Thomas Kurth, Susanne Reinhardt, Andreas Petzold, Andreas Dahl, Markus Loeffler, Michell M. Reimer, Michael Brand
Reactive oligodendrocyte progenitor cells (re-)myelinate the regenerating zebrafish spinal cord
Development 147(24):dev193946 (Dec 16, 2020)
DOI: 10.1242/dev.193946

Andreas Müller, Deborah Schmidt, C. Shan Xu, Song Pang, Joyson Verner D’Costa, Susanne Kretschmar, Carla Münster, Thomas Kurth, Florian Jug, Martin Weigert, Harald F. Hess, Michele Solimena
3D FIB-SEM reconstruction of microtubule–organelle interaction in whole primary mouse β cells
Journal of Cell Biology 220(2) (Dec 16, 2020)
DOI: 10.1083/jcb.202010039

Louise Jawerth, Elisabeth Fischer-Friedrich, Suropriya Saha, Jie Wang, Titus Franzmann, Xiaojie Zhang, Jenny Sachweh, Martine Ruer, Mahdiye Ijavi, Shambaditya Saha, Julia Mahamid, Anthony A. Hyman, Frank Jülicher
Protein Condensates as Aging Maxwell Fluids
Science 370(6522):1317–1323 (Dec 11, 2020)
DOI: 10.1126/science.aaw4951

Yuta Suzuki, Eugene W. Myers, Shinichi Morishita
Rapid and ongoing evolution of repetitive sequence structures in human centromeres
Sci. Adv. 6(50) (Dec 11, 2020)
DOI: 10.1126/sciadv.abd9230

Srija Bhagavatula, Elisabeth Knust
A putative stem-loop structure in Drosophila crumbs is required for mRNA localisation in epithelia and germline cells
Journal of Cell Science (Dec 11, 2020)
DOI: 10.1242/jcs.236497

Tina Wiegand, Anthony A Hyman
Drops and fibers - how biomolecular condensates and cytoskeletal filaments influence each other
Emerg Top Life Sci (Dec 11, 2020)
DOI: 10.1042/ETLS20190174

André Scholich, Simon Syga, Hernán Morales-Navarrete, Fabián Segovia-Miranda, Hidenori Nonaka, Kirstin Meyer, Walter de Back, Lutz Brusch, Yannis Kalaidzidis, Marino Zerial, Frank Jülicher, Benjamin M. Friedrich
Quantification of nematic cell polarity in three-dimensional tissues
PLoS Comput Biol; 16(12): e1008412 (Dec 10, 2020)
DOI: 10.1371/journal.pcbi.1008412

Nishant Kumar, Stefan Gumhold
FuseVis: Interpreting Neural Networks for Image Fusion Using Per-Pixel Saliency Visualization
Computers 9(4):98 (Dec 10, 2020)
DOI: 10.3390/computers9040098

Sui L, Dahmann C
Increased lateral tension is sufficient for epithelial folding in Drosophila
Development, 147(23):dev194316. (Dec 4, 2020)
DOI: 10.1242/dev.194316

Pierre Gillotay, Meghna Shankar, Benoit Haerlingen, Sema Elif Eski, Macarena Pozo-Morales, Inés Garteizgogeascoa, Susanne Reinhardt, Annekathrin Kränkel, Juliane Bläsche, Andreas Petzold, Nikolay Ninov, Gokul Kesavan, Christian Lange, Michael Brand, Anne Lefort, Frédérick Libert, Vincent Detours, Sabine Costagliola, Singh Sumeet Pal
Single-cell transcriptome analysis reveals thyrocyte diversity in the zebrafish thyroid gland
EMBO Rep 21(12):e50612 (Dec 3, 2020)
DOI: 10.15252/embr.202050612

Vijay S. Adusumilli, Tara L. Walker, Rupert W. Overall, Gesa M. Klatt, Salma A. Zeidan, Sara Zocher, Dilyana G. Kirova, Konstantinos Ntitsias, Tim J. Fischer, Alex M. Sykes, Susanne Reinhardt, Andreas Dahl, Jörg Mansfeld, Annette E. Rünker, Gerd Kempermann
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Unconventional Optical Imaging II (Mar 30, 2020)
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Theresa Suckert, Johannes Müller, Elke Beyreuther, Behnam Azadegan, Anja Brüggemann, Rebecca Bütof, Antje Dietrich, Malte Gotz, Robert Haase, Michael Schürer, Falk Tillner, Cläre von Neubeck, Mechthild Krause, Armin Lühr
High-precision image-guided proton irradiation of mouse brain sub-volumes
Radiotherapy and Oncology 146:205–212 (Mar 26, 2020)
DOI: 10.1016/j.radonc.2020.02.023

Milena Schuhmacher, Andreas T. Grasskamp, Pavel Barahtjan, Nicolai Wagner, Benoit Lombardot, Jan S. Schuhmacher, Pia Sala, Annett Lohmann, Ian Henry, Andrej Shevchenko, Ünal Coskun, Alexander M. Walter, André Nadler
Live-cell lipid biochemistry reveals a role of diacylglycerol side-chain composition for cellular lipid dynamics and protein affinities
Proc. Natl. Acad. Sci. U.S.A. 117(14):7729–7738 (Mar 26, 2020)
DOI: 10.1073/pnas.1912684117

Ruslan Rust, Tunahan Kirabali, Lisa Grönnert, Berre Dogancay, Yanuar D. P. Limasale, Andrea Meinhardt, Carsten Werner, Bàrbara Laviña, Luka Kulic, Roger M. Nitsch, Christian Tackenberg, Martin E. Schwab
A Practical Guide to the Automated Analysis of Vascular Growth, Maturation and Injury in the Brain
Front. Neurosci. 14 (Mar 20, 2020)
DOI: 10.3389/fnins.2020.00244

Sider Penkov, Bharath Kumar Raghuraman, Cihan Erkut, Jana Oertel, Roberta Galli, Eduardo Jacobo Miranda Ackerman, Daniela Vorkel, Jean-Marc Verbavatz, Edmund Koch, Karim Fahmy, Andrej Shevchenko, Teymuras V. Kurzchalia
A metabolic switch regulates the transition between growth and diapause in C. elegans
BMC Biol 18(1), 31 (Mar 18, 2020)
DOI: 10.1186/s12915-020-0760-3

Justus A. Kromer, Noelia de la Cruz, Benjamin M. Friedrich
Chemokinetic Scattering, Trapping, and Avoidance of Active Brownian Particles
Phys. Rev. Lett. 124, 118101 (Mar 17, 2020)
DOI: 10.1103/PhysRevLett.124.118101

Hannes Radner, Johannes Stange, Lars Buttner, Jurgen Czarske
Field-Programmable System-on-Chip-Based Control System for Real-Time Distortion Correction in Optical Imaging
IEEE Trans. Ind. Electron. 68(4):3370–3379 (Mar 17, 2020)
DOI: 10.1109/tie.2020.2979557

David T. Gonzales, T-Y Dora Tang, Christoph Zechner
Moment-based analysis of biochemical networks in a heterogeneous population of communicating cells
2019 IEEE 58th Conference on Decision and Control (CDC) (Mar 13, 2020)
DOI: 10.1109/cdc40024.2019.9029457

Liyuan Sui and Christian Dahmann
Wingless counteracts epithelial folding by increasing mechanical tension at basal cell edges in Drosophila
Development 147(5) dev184713. (Mar 11, 2020)
DOI: 10.1242/dev.184713

Marcus Michel and Christian Dahmann
Tissue mechanical properties modulate cell extrusion in the Drosophila abdominal epidermis
Development 147(5) dev179606. (Mar 11, 2020)
DOI: 10.1242/dev.179606

Elias Scharf, Robert Kuschmierz, Jürgen Czarske
Robust 4D wavefront control through coherent fiber bundles for lensless endoscopy and optical tweezing (Conference Presentation)
Adaptive Optics and Wavefront Control for Biological Systems VI (Mar 11, 2020)
DOI: 10.1117/12.2543213

Andrea Bertoncini, Gheorghe Cojoc, Jochen Guck, Carlo Liberale
High-throughput fabrication of right-angle prism mirrors with selective metalization by two-step 3D printing and computer vision alignment
Advanced Fabrication Technologies for Micro/Nano Optics and Photonics XIII (Feb 28, 2020)
DOI: 10.1117/12.2544147

Nora Molkenthin, Steffen Mühle, Antonia S. J. S. Mey, Marc Timme
Self-organized emergence of folded protein-like network structures from geometric constraints
PLoS ONE 15(2): e0229230 (Feb 27, 2020)
DOI: 10.1371/journal.pone.0229230

Ritika Giri, Dimitrios K Papadopoulos, Diana M Posadas, Hemanth K Potluri, Pavel Tomancak, Madhav Mani, Richard W Carthew
Ordered patterning of the sensory system is susceptible to stochastic features of gene expression
eLife 9 (Feb 26, 2020)
DOI: 10.7554/elife.53638

Haifeng Xu, Mariana Medina-Sánchez, Manfred F. Maitz, Carsten Werner, Oliver G. Schmidt
Sperm Micromotors for Cargo Delivery through Flowing Blood
ACS Nano 14(3):2982–2993 (Feb 25, 2020)
DOI: 10.1021/acsnano.9b07851

Johannes Luong, Dirk Habich, Wolfgang Lehner
A Technical Perspective of DataCalc — Ad-hoc Analyses on Heterogeneous Data Sources
2019 IEEE International Conference on Big Data (Big Data) (Feb 25, 2020)
DOI: 10.1109/bigdata47090.2019.9006029

Maik Herbig, Ahmad Ahsan Nawaz, Marta Urbanska, Martin Nötzel, Martin Kräter, Philipp Rosendahl, Christoph Herold, Nicole Töpfner, Marketa Kubankova, Ruchi Goswami, Shada Abuhattum, Felix Reichel, Paul Müller, Anna Taubenberger, Salvatore Girardo, Angela Jacobi, Jochen R. Guck
Image-based cell sorting using artificial intelligence
High-Speed Biomedical Imaging and Spectroscopy V (Feb 20, 2020)
DOI: 10.1117/12.2544809

Alexander Krull, Tomáš Vičar, Mangal Prakash, Manan Lalit, Florian Jug
Probabilistic Noise2Void: Unsupervised Content-Aware Denoising
Front. Comput. Sci. 2 (Feb 19, 2020)
DOI: 10.3389/fcomp.2020.00005

Giovanni Pasquini, Virginia Cora, Anka Swiersy, Kevin Achberger, Lena Antkowiak, Brigitte Müller, Tobias Wimmer, Sabine Anne-Kristin Fraschka, Nicolas Casadei, Marius Ueffing, Stefan Liebau, Knut Stieger, Volker Busskamp
Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing
IJMS 21(4):1380 (Feb 19, 2020)
DOI: 10.3390/ijms21041380

Stefan Rothe, Qian Zhang, Nektarios Koukourakis, Jürgen W. Czarske
Deep Learning for Computational Mode Decomposition in Optical Fibers
Applied Sciences 10(4):1367 (Feb 18, 2020)
DOI: 10.3390/app10041367

Georg Krainer, Mathias Schenkel, Andreas Hartmann, Dorna Ravamehr-Lake, Charles M. Deber, Michael Schlierf
CFTR transmembrane segments are impaired in their conformational adaptability by a pathogenic loop mutation and dynamically stabilized by Lumacaftor
J. Biol. Chem. 295:1985–1991 (Feb 14, 2020)
DOI: 10.1074/jbc.AC119.011360

Sebastian Kühn, Jana Sievers, Aukha Stoppa, Nicole Träber, Ralf Zimmermann, Petra B. Welzel, Carsten Werner
Cell-Instructive Multiphasic Gel-in-Gel Materials
Advanced Functional Materials (Feb 14, 2020)
DOI: 10.1002/adfm.201908857

Matthäus Mittasch, Vanna M. Tran, Manolo U. Rios, Anatol W. Fritsch, Stephen J. Enos, Beatriz Ferreira Gomes, Alec Bond, Moritz Kreysing, Jeffrey B. Woodruff
Regulated changes in material properties underlie centrosome disassembly during mitotic exit
Journal of Cell Biology 219(4) (Feb 12, 2020)
DOI: 10.1083/jcb.201912036

Lars Büttner, Martin Thümmler, Jürgen Czarske
Velocity measurements with structured light transmitted through a multimode optical fiber using digital optical phase conjugation
Opt. Express 28(6):8064 (Feb 11, 2020)
DOI: 10.1364/oe.386047

Sona Valuchova, Pavlina Mikulkova, Jana Pecinkova, Jana Klimova, Michal Krumnikl, Petr Bainar, Stefan Heckmann, Pavel Tomancak, Karel Riha
Imaging plant germline differentiation within Arabidopsis flowers by light sheet microscopy
eLife 9 (Feb 11, 2020)
DOI: 10.7554/elife.52546

Adeeba Fathima Valiya Thodiyil, André Ohara, Nicole Poulsen, Nils Kröger, Michael Schlierf
Using Correlative Superresolution Fluorescence and Electron Microscopy to Unravel Diatom Morphogenesis
Biophysical Journal 118(3):148a–149a (Feb 7, 2020)
DOI: 10.1016/j.bpj.2019.11.932

Rouhollah Habibey, Kritika Sharma, Anka Swiersy, Volker Busskamp
Optogenetics for neural transplant manipulation and functional analysis
Biochemical and Biophysical Research Communications 527(2):343–349 (Feb 6, 2020)
DOI: 10.1016/j.bbrc.2020.01.141

Helen K. Matthews, Sushila Ganguli, Katarzyna Plak, Anna V. Taubenberger, Zaw Win, Max Williamson, Matthieu Piel, Jochen Guck, Buzz Baum
Oncogenic Signaling Alters Cell Shape and Mechanics to Facilitate Cell Division under Confinement
Developmental Cell 52(5):563–573.e3 (Feb 6, 2020)
DOI: 10.1016/j.devcel.2020.01.004

Elvis Koci, Maik Thiele, Oscar Romero, Wolfgang Lehner
A Genetic-Based Search for Adaptive Table Recognition in Spreadsheets
2019 International Conference on Document Analysis and Recognition (ICDAR) (Feb 4, 2020)
DOI: 10.1109/icdar.2019.00206

Elvis Koci, Maik Thiele, Josephine Rehak, Oscar Romero, Wolfgang Lehner
DECO: A Dataset of Annotated Spreadsheets for Layout and Table Recognition
2019 International Conference on Document Analysis and Recognition (ICDAR) (Feb 4, 2020)
DOI: 10.1109/icdar.2019.00207

Satu Kujawski, Cátia Crespo, Marta Luz, Michaela Yuan, Sylke Winkler, Elisabeth Knust
Loss of Crb2b-lf leads to anterior segment defects in old zebrafish
Biology Open (Jan 27, 2020)
DOI: 10.1242/bio.047555

Adam Klosin, Florian Oltsch, Tyler Harmon, Alf Honigmann, Frank Jülicher, Anthony Hyman, Christoph Zechner
Phase separation provides a mechanism to reduce noise in cells
Science 367(6476):464–468. (Jan 24, 2020)
DOI: 10.1126/science.aav6691

Ben Newland, Fanny Ehret, Franziska Hoppe, Dimitri Eigel, Dagmar Pette, Heike Newland, Petra B. Welzel, Gerd Kempermann, Carsten Werner
Static and dynamic 3D culture of neural precursor cells on macroporous cryogel microcarriers
MethodsX 7:100805 (Jan 24, 2020)
DOI: 10.1016/j.mex.2020.100805

Hao Zhang, Damian Anders, Michael Löser, Steffen Ihlenfeldt, Jürgen Czarske, Robert Kuschmierz
Non-contact, bi-directional tool tip vibration measurement in CNC milling machines with a single optical sensor
Mechanical Systems and Signal Processing 139:106647 (Jan 24, 2020)
DOI: 10.1016/j.ymssp.2020.106647

Shengyu Shi, Robert Kuschmierz, Guizhen Zhang, Jing Lin, Jürgen Czarske, Jinping Qu
Modeling, quantification, and mitigation of uncertainty propagation in two-step roundness measurements
Measurement 155:107530 (Jan 23, 2020)
DOI: 10.1016/j.measurement.2020.107530

Martin Pippel, David Jebb, Franziska Patzold, Sylke Winkler, Heiko Vogel, Gene Myers, Michael Hiller, Anna K Hundsdoerfer
A highly contiguous genome assembly of the bat hawkmoth Hyles vespertilio (Lepidoptera: Sphingidae)
GigaScience 9(1) (Jan 23, 2020)
DOI: 10.1093/gigascience/giaa001

Stephanie Möllmert, Maria A. Kharlamova, Tobias Hoche, Anna V. Taubenberger, Shada Abuhattum, Veronika Kuscha, Thomas Kurth, Michael Brand, Jochen Guck
Zebrafish Spinal Cord Repair Is Accompanied by Transient Tissue Stiffening
Biophysical Journal (Jan 21, 2020)
DOI: 10.1016/j.bpj.2019.10.044

Celina Love, Jan Steinkühler, David T. Gonzales, Naresh Yandrapalli, Tom Robinson, Rumiana Dimova, T.‐Y. Dora Tang
Reversible pH‐Responsive Coacervate Formation in Lipid Vesicles Activates Dormant Enzymatic Reactions
Angew Chem Int Ed 59(15):5950–5957 (Jan 14, 2020)
DOI: 10.1002/anie.201914893

Alexander Krull, Tim-Oliver Buchholz, Florian Jug
Noise2Void - Learning Denoising From Single Noisy Images
2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) (Jan 10, 2020)
DOI: 10.1109/cvpr.2019.00223

Kathleen R Bashant, Nicole Toepfner, Christopher J Day, Nehal N Mehta, Mariana J Kaplan, Charlotte Summers, Jochen Guck, Edwin R Chilvers
The mechanics of myeloid cells
Biology of the Cell 112(4):103–112 (Jan 9, 2020)
DOI: 10.1111/boc.201900084

Christian Lange, Fabian Rost, Anja Machate, Susanne Reinhardt, Matthias Lesche, Anke Weber, Veronika Kuscha, Andreas Dahl, Steffen Rulands, Michael Brand
Single cell sequencing of radial glia progeny reveals the diversity of newborn neurons in the adult zebrafish brain
Development, 147 (1): dev185595 (Jan 9, 2020)
DOI: 10.1242/dev.185595

Samuel J. Bose, Georg Krainer, Demi R.S. Ng, Mathias Schenkel, Hideki Shishido, Jae Seok Yoon, Peter M. Haggie, Michael Schlierf, David N. Sheppard, William R. Skach
Towards next generation therapies for cystic fibrosis: Folding, function and pharmacology of CFTR
Journal of Cystic Fibrosis 19:S25–S32 (Jan 3, 2020)
DOI: 10.1016/j.jcf.2019.12.009

Hiroki R. Ueda, Ali Ertürk, Kwanghun Chung, Viviana Gradinaru, Alain Chédotal, Pavel Tomancak, Philipp J. Keller
Tissue clearing and its applications in neuroscience
Nat Rev Neurosci 21(2):61–79 (Jan 2, 2020)
DOI: 10.1038/s41583-019-0250-1

Wenjie Wang, Katrin Philipp, Nektarios Koukourakis, Jürgen W. Czarske
Real-time monitoring of adaptive lenses with high tuning range and multiple degrees of freedom
Opt. Lett. 45(2):272 (Jan 2, 2020)
DOI: 10.1364/ol.45.000272

2019

223 publication(s) listed

A. Gong, S. Rode, U. B. Kaupp, G. Gompper, J. Elgeti, B. M. Friedrich, L. Alvarez
The steering gaits of sperm
Phil. Trans. R. Soc. B 375(1792):20190149 (Dec 30, 2019)
DOI: 10.1098/rstb.2019.0149

Richard Nauber, Lars Buttner, Jurgen Czarske
Ultrasound Imaging in Hot Melts with Time Reversal Virtual Arrays
2019 IEEE International Ultrasonics Symposium (IUS) (Dec 27, 2019)
DOI: 10.1109/ultsym.2019.8926053

Takashi Namba, Judit Dóczi, Anneline Pinson, Lei Xing, Nereo Kalebic, Michaela Wilsch-Bräuninger, Katherine R. Long, Samir Vaid, Janelle Lauer, Aliona Bogdanova, Barbara Borgonovo, Anna Shevchenko, Patrick Keller, David Drechsel, Teymuras Kurzchalia, Pauline Wimberger, Christos Chinopoulos, Wieland B. Huttner
Human-Specific ARHGAP11B Acts in Mitochondria to Expand Neocortical Progenitors by Glutaminolysis
Neuron 105(5):867–881.e9 (Dec 26, 2019)
DOI: 10.1016/j.neuron.2019.11.027

Ben Newland, Fanny Ehret, Franziska Hoppe, Dimitri Eigel, Dagmar Pette, Heike Newland, Petra B. Welzel, Gerd Kempermann, Carsten Werner
Macroporous heparin-based microcarriers allow long-term 3D culture and differentiation of neural precursor cells
Biomaterials 230, 119540 (Dec 20, 2019)
DOI: 10.1016/j.biomaterials.2019.119540

Paulo Caldas, Mar López-Pelegrín, Daniel J. G. Pearce, Nazmi Burak Budanur, Jan Brugués, Martin Loose
Cooperative ordering of treadmilling filaments in cytoskeletal networks of FtsZ and its crosslinker ZapA
Nat Commun 10, 5744 (Dec 17, 2019)
DOI: 10.1038/s41467-019-13702-4

Felix Greiffenhagen, Jakob Woisetschläger, Johannes Gürtler, Jürgen Czarske
Quantitative measurement of density fluctuations with a full-field laser interferometric vibrometer
Exp Fluids 61(1), 9 (Dec 16, 2019)
DOI: 10.1007/s00348-019-2842-y

Rachel S. Kraut, Elisabeth Knust
Changes in endolysosomal organization define a pre-degenerative state in the crumbs mutant Drosophila retina
PLoS ONE 14(12):e0220220 (Dec 13, 2019)
DOI: 10.1371/journal.pone.0220220

Kaushikaram Subramanian, Martin Weigert, Oliver Borsch, Heike Petzold, Alfonso Garcia-Ulloa, Eugene W Myers, Marius Ader, Irina Solovei, Moritz Kreysing
Rod nuclear architecture determines contrast transmission of the retina and behavioral sensitivity in mice
eLife 2019;8:e49542 (Dec 11, 2019)
DOI: 10.7554/eLife.49542

Florian Bürkle, Florine Moyon, Lukas Feierabend, Jens Wartmann, Angelika Heinzel, Jürgen Czarske, Lars Büttner
Investigation and equalisation of the flow distribution in a fuel cell stack
Journal of Power Sources 448:227546 (Dec 10, 2019)
DOI: 10.1016/j.jpowsour.2019.227546

Yachong Guo, Marco Werner, Wenfei Li, Jens-Uwe Sommer, Vladimir A. Baulin
Shape-Adaptive Single-Chain Nanoparticles Interacting with Lipid Membranes
Macromolecules 52(24):9578–9584 (Dec 10, 2019)
DOI: 10.1021/acs.macromol.9b02102

Sarita Hebbar, Elisabeth Knust, Guillaume Thibault, Rachel Susan Kraut
Editorial: Connections to Membrane Trafficking Where You Least Expect Them: Diseases, Dynamics, Diet and Distance
Front. Cell Dev. Biol. 7 (Dec 6, 2019)
DOI: 10.3389/fcell.2019.00327

Daniela Mayer, Michael B Stadler, Melanie Rittirsch, Daniel Hess, Ilya Lukonin, Maria Winzi, Austin Smith, Frank Buchholz, Joerg Betschinger
Zfp281 orchestrates interconversion of pluripotent states by engaging Ehmt1 and Zic2
The EMBO Journal 39(2) (Nov 29, 2019)
DOI: 10.15252/embj.2019102591

Hassan Mziaut, Georg Henniger, Katharina Ganss, Sebastian Hempel, Steffen Wolk, Johanna McChord, Kamal Chowdhury, Philippe Ravassard, Klaus-Peter Knoch, Christian Krautz, Jürgen Weitz, Robert Grützmann, Christian Pilarsky, Michele Solimena, Stephan Kersting
MiR-132 controls pancreatic beta cell proliferation and survival through Pten/Akt/Foxo3 signaling
Molecular Metabolism 31:150–162 (Nov 22, 2019)
DOI: 10.1016/j.molmet.2019.11.012

Rebecca Bütof, Steffen Löck, Maher Soliman, Robert Haase, Rosalind Perrin, Christian Richter, Steffen Appold, Mechthild Krause, Michael Baumann
Dose–volume predictors of early esophageal toxicity in non-small cell lung cancer patients treated with accelerated-hyperfractionated radiotherapy
Radiotherapy and Oncology 143:44–50 (Nov 22, 2019)
DOI: 10.1016/j.radonc.2019.11.002

Antoine Graindorge, Inês Pinheiro, Anna Nawrocka, Allison C. Mallory, Peter Tsvetkov, Noa Gil, Carlo Carolis, Frank Buchholz, Igor Ulitsky, Edith Heard, Mikko Taipale, Alena Shkumatava
In-cell identification and measurement of RNA-protein interactions
Nat Commun 10(1), 5317 (Nov 22, 2019)
DOI: 10.1038/s41467-019-13235-w

Muhammad Idris, Martín Ugarte, Stijn Vansummeren, Hannes Voigt, Wolfgang Lehner
General dynamic Yannakakis: conjunctive queries with theta joins under updates
The VLDB Journal 29(2-3):619–653 (Nov 19, 2019)
DOI: 10.1007/s00778-019-00590-9

N. Träber, K. Uhlmann, S. Girardo, G. Kesavan, K. Wagner, J. Friedrichs, R. Goswami, K. Bai, M. Brand, C. Werner, D. Balzani, J. Guck
Polyacrylamide Bead Sensors for in vivo Quantification of Cell-Scale Stress in Zebrafish Development
Sci Rep 9, 17031 (2019). (Nov 19, 2019)
DOI: 10.1038/s41598-019-53425-6

Cyril Basquin, Dmitry Ershov, Noémie Gaudin, Hanh Thi-Kim Vu, Bruno Louis, Jean-François Papon, Anne-Marie Orfila, Sarah Mansour, Jochen Christian Rink, Juliette Azimzadeh
Emergence of a Bilaterally Symmetric Pattern from Chiral Components in the Planarian Epidermis
Developmental Cell 51(4):516–525.e5 (Nov 18, 2019)
DOI: 10.1016/j.devcel.2019.10.021

Hanh Thi-Kim Vu, Sarah Mansour, Michael Kücken, Corinna Blasse, Cyril Basquin, Juliette Azimzadeh, Eugene Wimberly Myers, Lutz Brusch, Jochen Christian Rink
Dynamic Polarization of the Multiciliated Planarian Epidermis between Body Plan Landmarks
Developmental Cell 51(4):526–542.e6 (Nov 18, 2019)
DOI: 10.1016/j.devcel.2019.10.022

Robert Haase, Loic A. Royer, Peter Steinbach, Deborah Schmidt, Alexandr Dibrov, Uwe Schmidt, Martin Weigert, Nicola Maghelli, Pavel Tomancak, Florian Jug, Eugene W. Myers
CLIJ: GPU-accelerated image processing for everyone
Nat Methods 17(1):5–6 (Nov 18, 2019)
DOI: 10.1038/s41592-019-0650-1

Hauke Drechsler, Yong Xu, Veikko F. Geyer, Yixin Zhang, Stefan Diez
Multivalent electrostatic microtubule-interactions of synthetic peptides are sufficient to mimic advanced MAP-like behaviour
Mol Biol Cell 30(24), 2953–2968 (Nov 14, 2019)
DOI: 10.1091/mbc.E19-05-0247

Ritsuya Niwayama, Prachiti Moghe, Yan-Jun Liu, Dimitri Fabrèges, Frank Buchholz, Matthieu Piel, Takashi Hiiragi
A Tug-of-War between Cell Shape and Polarity Controls Division Orientation to Ensure Robust Patterning in the Mouse Blastocyst
Developmental Cell 51(5):564–574.e6 (Nov 14, 2019)
DOI: 10.1016/j.devcel.2019.10.012

Theresia Gutmann, Ingmar B. Schäfer, Chetan Poojari, Beate Brankatschk, Ilpo Vattulainen, Mike Strauss, Ünal Coskun
Cryo-EM structure of the complete and ligand-saturated insulin receptor ectodomain
Journal of Cell Biology 219(1) (Nov 14, 2019)
DOI: 10.1083/jcb.201907210

Manja Wobus, Anna Mies, Valentina Magno, Cindy Welzel, Susann Winter, Friedrich Stoelzel, Carsten Werner, Martin Bornhaeuser, Uwe Platzbecker
Altered Structure and Function of Mesenchymal Stromal Cell-Derived Extracellular Matrix in MDS Can be Restored By Luspatercept
Blood 134(Supplement_1):1699–1699 (Nov 14, 2019)
DOI: 10.1182/blood-2019-129814

Janelle Lauer, Sandra Segeletz, Alice Cezanne, Giambattista Guaitoli, Francesco Raimondi, Marc Gentzel, Vikram Alva, Michael Habeck, Yannis Kalaidzidis, Marius Ueffing, Andrei N Lupas, Christian Johannes Gloeckner, Marino Zerial
Auto-regulation of Rab5 GEF activity in Rabex5 by allosteric structural changes, catalytic core dynamics and ubiquitin binding
(Nov 13, 2019)
DOI: 10.7554/eLife.46302

Abhik Basu, Jean-Francois Joanny, Frank Jülicher, Jacques Prost
Casimir stresses in active nematic films
New J. Phys. 21(12):123046 (Nov 11, 2019)
DOI: 10.1088/1367-2630/ab5628

Katrin Wagner, Salvatore Girardo, Ruchi Goswami, Gonzalo Rosso, Elke Ulbricht, Paul Müller, Despina Soteriou, Nicole Träber, Jochen Guck
Colloidal crystals of compliant microgel beads to study cell migration and mechanosensitivity in 3D
Soft Matter 15(47):9776–9787 (Nov 7, 2019)
DOI: 10.1039/c9sm01226e

Johanna Lattner, Weihua Leng, Elisabeth Knust, Marko Brankatschk, David Flores-Benitez
Crumbs organizes the transport machinery by regulating apical levels of PI(4,5)P2 in Drosophila
eLife 8 (Nov 7, 2019)
DOI: 10.7554/elife.50900

Felix Lansing, Maciej Paszkowski-Rogacz, Lukas Theo Schmitt, Paul Martin Schneider, Teresa Rojo Romanos, Jan Sonntag, Frank Buchholz
A heterodimer of evolved designer-recombinases precisely excises a human genomic DNA locus
Nucleic Acids Research 48(1):472–485 (Nov 4, 2019)
DOI: 10.1093/nar/gkz1078

Frank Jülicher
Suzanne Eaton (1959-2019)
Development 146(21) (Nov 4, 2019)
DOI: 10.1242/dev.185538

Oliver Beutel, Riccardo Maraspini, Karina Pombo-García, Cécilie Martin-Lemaitre, Alf Honigmann
Phase Separation of Zonula Occludens Proteins Drives Formation of Tight Junctions
Cell 179(4), 923-936.e11 (Oct 31, 2019)
DOI: 10.1016/j.cell.2019.10.011

Alexander Mietke, V. Jemseena, K. Vijay Kumar, Ivo F. Sbalzarini, Frank Jülicher
Minimal model of cellular symmetry breaking
Phys. Rev. Lett. 123, 188101 (Oct 28, 2019)
DOI: 10.1103/PhysRevLett.123.188101

Alexis R. Barr, Jörg Mansfeld
FEBS Letters Special Issue: Cell Cycle Control
FEBS Letters 593(20):2803–2804 (Oct 28, 2019)
DOI: 10.1002/1873-3468.13638

Ralf Zimmermann, Jérôme F.L. Duval, Carsten Werner
On the analysis of ionic surface conduction to unravel charging processes at macroscopic soft and hard solid–liquid interfaces
Current Opinion in Colloid & Interface Science 44:177–187 (Oct 28, 2019)
DOI: 10.1016/j.cocis.2019.10.004

Yan Ge, Philipp Rosendahl, Claudio Duran, Nicole Topfner, Sara Ciucci, Jochen Guck, Carlo Vittorio Cannistraci
Cell Mechanics Based Computational Classification of Red Blood Cells Via Machine Intelligence Applied to Morpho-Rheological Markers
IEEE/ACM Trans. Comput. Biol. and Bioinf. 18(4):1405–1415 (Oct 28, 2019)
DOI: 10.1109/tcbb.2019.2945762

Dejan Husman, Petra B. Welzel, Steffen Vogler, Laura J. Bray, Nicole Träber, Jens Friedrichs, Vincent Körber, Mikhail V. Tsurkan, Uwe Freudenberg, Julian Thiele, Carsten Werner
Multiphasicmicrogel-in-gelmaterials to recapitulate cellular mesoenvironmentsin vitro
Biomater. Sci. 8(1):101–108 (Oct 25, 2019)
DOI: 10.1039/c9bm01009b

Kayvan Forouhesh Tehrani, Nektarios Koukourakis, Jürgen Czarske, Luke Mortensen
Characterization of memory effect in juvenile mouse skull for imaging through intact bone
Biophotonics Congress: Optics in the Life Sciences Congress 2019 (BODA,BRAIN,NTM,OMA,OMP) (Oct 24, 2019)
DOI: 10.1364/boda.2019.jt4a.27

Nektarios Koukourakis, Jürgen Czarske
Adaptive hybrid illumination microscopy for Zebrafish screening
Biophotonics Congress: Optics in the Life Sciences Congress 2019 (BODA,BRAIN,NTM,OMA,OMP) (Oct 24, 2019)
DOI: 10.1364/ntm.2019.nt3c.2

Markian Pryshliak, Ahmet Hazini, Klaus Knoch, Babette Dieringer, Beatrice Tolksdorf, Michele Solimena, Jens Kurreck, Sandra Pinkert, Henry Fechner
MiR‐375‐mediated suppression of engineered coxsackievirus B3 in pancreatic cells
FEBS Letters 594(4):763–775 (Oct 23, 2019)
DOI: 10.1002/1873-3468.13647

Lucas Schirmer, Karolina Chwalek, Mikhail V. Tsurkan, Uwe Freudenberg, Carsten Werner
Glycosaminoglycan-based hydrogels with programmable host reactions
Biomaterials 228:119557 (Oct 23, 2019)
DOI: 10.1016/j.biomaterials.2019.119557

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Taraneh Zarin, Bob Strome, Alex N Nguyen Ba, Simon Alberti, Julie D Forman-Kay, Alan M Moses
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N. Thieme, M. Keil, D. Meier, P. Bönisch, K. Dadzis, O. Pätzold, M. Stelter, L. Büttner, J. Czarske
Directional solidification of gallium under time-dependent magnetic fields with in situ measurements of the melt flow and the solid-liquid interface
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Jessica Mandrioli, Laura Mediani, Simon Alberti, Serena Carra
ALS and FTD: Where RNA metabolism meets protein quality control
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Tomas Vicar, Jan Balvan, Josef Jaros, Florian Jug, Radim Kolar, Michal Masarik, Jaromir Gumulec
Cell segmentation methods for label-free contrast microscopy: review and comprehensive comparison
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Franz Kapplusch, Felix Schulze, Sabrina Rabe-Matschewsky, Susanne Russ, Maik Herbig, Michael Christian Heymann, Katharina Schoepf, Robert Stein, Ursula Range, Angela Rösen-Wolff, Stefan Winkler, Christian Michael Hedrich, Jochen Guck, Sigrun Ruth Hofmann
CASP1 variants influence subcellular caspase-1 localization, pyroptosome formation, pro-inflammatory cell death and macrophage deformability
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Michael V. Sefton, Claudia Sperling, Manfred F. Maitz, Carsten Werner
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Ruslan Rust, Lisa Grönnert, Christina Gantner, Alinda Enzler, Geertje Mulders, Rebecca Z. Weber, Arthur Siewert, Yanuar D. P. Limasale, Andrea Meinhardt, Michael A. Maurer, Andrea M. Sartori, Anna-Sophie Hofer, Carsten Werner, Martin E. Schwab
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Mikhail Zarubin, Patrick Damme, Thomas Kissinger, Dirk Habich, Wolfgang Lehner, Thomas Willhalm
Integer Compression in NVRAM-centric Data Stores
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Lucas Lersch, Wolfgang Lehner, Ismail Oukid
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Anna K.L. Liess, Alena Kucerova, Kristian Schweimer, Lu Yu, Theodoros I. Roumeliotis, Mathias Diebold, Olexandr Dybkov, Christoph Sotriffer, Henning Urlaub, Jyoti S. Choudhary, Jörg Mansfeld, Sonja Lorenz
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Manfred F. Maitz, M. Cristina L. Martins, Niels Grabow, Claudia Matschegewski, Nan Huang, Elliot L. Chaikof, Mário A. Barbosa, Carsten Werner, Claudia Sperling
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Maud Gorbet, Claudia Sperling, Manfred F. Maitz, Christopher A. Siedlecki, Carsten Werner, Michael V. Sefton
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Frank Tetzel, Romans Kasperovics, Wolfgang Lehner
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Ralf Zimmermann, Christoph Hentschel, Felix Schrön, Denise Moedder, Teresa Büttner, Passant Atallah, Thomas Wegener, Thomas Gehring, Steffen Howitz, Uwe Freudenberg, Carsten Werner
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Alexander Krause, Thomas Kissinger, Dirk Habich, Wolfgang Lehner
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Dirk Habich, Patrick Damme, Annett Ungethüm, Johannes Pietrzyk, Alexander Krause, Juliana Hildebrandt, Wolfgang Lehner
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Patrick Damme, Annett Ungethüm, Juliana Hildebrandt, Dirk Habich, Wolfgang Lehner
From a Comprehensive Experimental Survey to a Cost-based Selection Strategy for Lightweight Integer Compression Algorithms
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Hernán Morales-Navarrete, Hidenori Nonaka, André Scholich, Fabián Segovia-Miranda, Walter de Back, Kirstin Meyer, Roman L Bogorad, Victor Koteliansky, Lutz Brusch, Yannis Kalaidzidis*, Frank Jülicher*, Benjamin M Friedrich*, Marino Zerial*
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Angela Jacobi, Philipp Rosendahl, Martin Kräter, Marta Urbanska, Maik Herbig, Jochen Guck
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Piero Marchetti, Anke M. Schulte, Lorella Marselli, Eyke Schoniger, Marco Bugliani, Werner Kramer, Lut Overbergh, Susanne Ullrich, Anna L. Gloyn, Mark Ibberson, Guy Rutter, Philippe Froguel, Leif Groop, Mark I. McCarthy, Francesco Dotta, Raphael Scharfmann, Christophe Magnan, Decio L. Eizirik, Chantal Mathieu, Miriam Cnop, Bernard Thorens, Michele Solimena
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Jeshlee Vijayakumar, Charlène Perrois, Marjorie Heim, Luc Bousset, Simon Alberti, Florence Besse
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Mattias Backman, Florian Flenkenthaler, Andreas Blutke, Maik Dahlhoff, Erik Ländström, Simone Renner, Julia Philippou-Massier, Stefan Krebs, Birgit Rathkolb, Cornelia Prehn, Michal Grzybek, Ünal Coskun, Michael Rothe, Jerzy Adamski, Martin Hrabĕ de Angelis, Rüdiger Wanke, Thomas Fröhlich, Georg J. Arnold, Helmut Blum, Eckhard Wolf
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Volker Hartenstein, Michaela Yuan, Amelia Younossi-Hartenstein, Aanavi Karandikar, F. Javier Bernardo-Garcia, Simon Sprecher, Elisabeth Knust
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Baldwin Nsonga, Martin Niemann, Jochen Fröhlich, Joachim Staib, Stefan Gumhold, Gerik Scheuermann
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Steven W. Poser, Oliver Otto, Carina Arps‐Forker, Yan Ge, Maik Herbig, Cordula Andree, Konrad Gruetzmann, Melissa F. Adasme, Szymon Stodolak, Polyxeni Nikolakopoulou, Deric M. Park, Alan Mcintyre, Mathias Lesche, Andreas Dahl, Petra Lennig, Stefan R. Bornstein, Evelin Schroeck, Barbara Klink, Ronen R. Leker, Marc Bickle, George P. Chrousos, Michael Schroeder, Carlo Vittorio Cannistraci, Jochen Guck, Andreas Androutsellis‐Theotokis
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Felix Reichel, Johannes Mauer, Ahmad Ahsan Nawaz, Gerhard Gompper, Jochen Guck, Dmitry A. Fedosov
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Andre Galuschko, Jens-Uwe Sommer
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Tiago Santos‐Ferreira, Maik Herbig, Oliver Otto, Madalena Carido, Mike O. Karl, Stylianos Michalakis, Jochen Guck, Marius Ader
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Marta Zuzic, Jesus Eduardo Rojo Arias, Stefanie Gabriele Wohl, Volker Busskamp
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Shady Sayed, Maciej Paszkowski-Rogacz, Lukas Theo Schmitt, Frank Buchholz
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Elisabeth Hoyer, Julius Knöppel, Martina Liebmann, Michael Steppert, Manuel Raiwa, Olivia Herczynski, Erik Hanspach, Susanne Zehner, Michael Göttfert, Satoru Tsushima, Karim Fahmy, Jana Oertel
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David E. Breen, Liyuan Sui, Linge Bai, Frank Jülicher, Christian Dahmann
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Christoph Tondera, Teuku Fawzul Akbar, Alvin Kuriakose Thomas, Weilin Lin, Carsten Werner, Volker Busskamp, Yixin Zhang, Ivan R. Minev
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Ceren Güneş, Maciej Paszkowski-Rogacz, Susann Rahmig, Shahryar Khattak, Aylin Camgöz, Martin Wermke, Andreas Dahl, Martin Bornhäuser, Claudia Waskow, Frank Buchholz
Comparative RNAi Screens in Isogenic Human Stem Cells Reveal SMARCA4 as a Differential Regulator
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Satu Kujawski, Mahendra Sonawane, Elisabeth Knust
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Martina Ugrinic, Andrew deMello, T.-Y. Dora Tang
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Niladri Sarkar, Jacques Prost, Frank Jülicher
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Hauke Haehne, Jose Casadiego, Joachim Peinke, Marc Timme
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Pamela L. Toledo, Juha M. Torkko, Andreas Müller, Carolin Wegbrod, Anke Sönmez, Michele Solimena, Mario R. Ermácora
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Shengyu Shi, Hao Zhang, Jinping Qu, Gang Jin, Robert Kuschmierz, Jürgen Czarske
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Vasiliki Tsata, Volker Kroehne, Susanne Reinhardt, Ali El-Armouche, Michael Brand, Michael Wagner, Michell M. Reimer
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Ingo Nitschke, Sebastian Reuther, Axel Voigt
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Jean-Michel Romano, Ralf Helbig, Fotis Fraggelakis, Antonio Garcia-Giron, Carsten Werner, Rainer Kling, Stefan Dimov
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Marc Gentzel, Mercedes Pardo, Sivaraman Subramaniam, A. Francis Stewart, Jyoti S. Choudhary
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Lara Marrone, Hannes C. A. Drexler, Jie Wang, Priyanka Tripathi, Tania Distler, Patrick Heisterkamp, Eric Nathaniel Anderson, Sukhleen Kour, Anastasia Moraiti, Shovamayee Maharana, Rajat Bhatnagar, T. Grant Belgard, Vadreenath Tripathy, Norman Kalmbach, Zohreh Hosseinzadeh, Valeria Crippa, Masin Abo-Rady, Florian Wegner, Angelo Poletti, Dirk Troost, Eleonora Aronica, Volker Busskamp, Joachim Weis, Udai Bhan Pandey, Anthony A. Hyman, Simon Alberti, Anand Goswami, Jared Sterneckert
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Stefan Münster, Akanksha Jain, Alexander Mietke, Anastasios Pavlopoulos, Stephan W. Grill, Pavel Tomancak
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Evelyn J. Sauter, Lisa K. Kutsche, Simon D. Klapper, Volker Busskamp
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Stephan Daetwyler, Ulrik Günther, Carl D. Modes, Kyle Harrington, Jan Huisken
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Katrin Philipp, Jürgen Czarske
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Annett Linge, Stefan Schmidt, Fabian Lohaus, Constanze Krenn, Anna Bandurska-Luque, Ivan Platzek, Cläre von Neubeck, Steffen Appold, Alexander Nowak, Volker Gudziol, Frank Buchholz, Gustavo B. Baretton, Michael Baumann, Steffen Löck, Mechthild Krause
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Amna Khamis, Mickaël Canouil, Afshan Siddiq, Hutokshi Crouch, Mario Falchi, Manon von Bulow, Florian Ehehalt, Lorella Marselli, Marius Distler, Daniela Richter, Jürgen Weitz, Krister Bokvist, Ioannis Xenarios, Bernard Thorens, Anke M. Schulte, Mark Ibberson, Amelie Bonnefond, Piero Marchetti, Michele Solimena, Philippe Froguel
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Shilpi Singh, Édgar Roldán, Izaak Neri, Ivan M. Khaymovich, Dmitry S. Golubev, Ville F. Maisi, Joonas T. Peltonen, Frank Jülicher, Jukka P. Pekola
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Jia Yin, Wentao Zheng, Yunsheng Gao, Chanjuan Jiang, Hongbo Shi, Xiaotong Diao, Shanshan Li, Hanna Chen, Hailong Wang, Ruijuan Li, Aiying Li, Liqiu Xia, Yulong Yin, A. Francis Stewart, Youming Zhang, Jun Fu
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Florian Lemke, Yasmina Frey, Binal P Bruno, Katrin Philipp, Nektarios Koukourakis, Jürgen Czarske, Ulrike Wallrabe, Matthias C Wapler
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Steffen Löck, Annett Linge, Annekatrin Seidlitz, Anna Bandurska-Luque, Alexander Nowak, Volker Gudziol, Frank Buchholz, Daniela E. Aust, Gustavo B. Baretton, Klaus Zöphel, Jörg Steinbach, Jörg Kotzerke, Jens Overgaard, Daniel Zips, Mechthild Krause, Michael Baumann, Esther G.C. Troost
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Felix Schmieder, Rouhollah Habibey, Lars Büttner, Jürgen W. Czarske, Volker Busskamp
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Kathleen R Bashant, Arlette Vassallo, Christoph Herold, Reinhard Berner, Leonhard Menschner, Julien Subburayalu, Mariana J Kaplan, Charlotte Summers, Jochen Guck, Edwin R Chilvers, Nicole Toepfner
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Rupam Choudhury, Sukhdeep Singh, Senthil Arumugam, Assen Roguev, A. Francis Stewart
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Chan-Fei Su, Holger Merlitz, Fabrice Thalmann, Carlos Marques, Jens-Uwe Sommer
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Julian Lich, Tino Wollmann, Angelos Filippatos, Maik Gude, Robert Kuschmierz, Jürgen Czarske
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Elias Scharf, Robert Kuschmierz, Jürgen Czarske
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Ann Mukhortava, Matthias Pöge, Maj Svea Grieb, Aleksandra Nivina, Celine Loot, Didier Mazel, Michael Schlierf
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Florian Noack, Abhijeet Pataskar, Martin Schneider, Frank Buchholz, Vijay K Tiwari, Federico Calegari
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Malte Schröder, Xiaozhu Zhang, Justine Wolter, Marc Timme
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Jean-Michel Romano, Rajib Ahmed, Antonio Garcia-Giron, Pavel Penchev, Haider Butt, Olivier Delléa, Melissa Sikosana, Ralf Helbig, Carsten Werner, Stefan Dimov
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Jan Kožusznik, Petr Bainar, Jana Klímová, Michal Krumnikl, Pavel Moravec, Václav Svatoň, Pavel Tomančák
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Stefanie Tietze, Martin Kräter, Angela Jacobi, Anna Taubenberger, Maik Herbig, Rebekka Wehner, Marc Schmitz, Oliver Otto, Catrin List, Berna Kaya, Manja Wobus, Martin Bornhäuser, Jochen Guck
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Claude N. Holenstein, Aron Horvath, Barbara Schär, Angelina D. Schoenenberger, Maja Bollhalder, Nils Goedecke, Guido Bartalena, Oliver Otto, Maik Herbig, Jochen Guck, Daniel A. Müller, Jess G. Snedeker, Unai Silvan
The relationship between metastatic potential and in vitro mechanical properties of osteosarcoma cells
MBoC 30(7):887–898 (Feb 20, 2019)
DOI: 10.1091/mbc.e18-08-0545

K. Venkatesan Iyer, Romina Piscitello-Gómez, Joris Paijmans, Frank Jülicher, Suzanne Eaton
Epithelial Viscoelasticity is Regulated by Mechanosensitive E-cadherin Turnover
Current Biology 29 (4), 578–591.e5, (Feb 18, 2019)
DOI: 10.1016/j.cub.2019.01.021

Leonard Schärfen, Michael Schlierf
Real-time monitoring of protein-induced DNA conformational changes using single-molecule FRET
Methods 169:11–20 (Feb 15, 2019)
DOI: 10.1016/j.ymeth.2019.02.011

Andrea J Korecki, Jack W Hickmott, Siu Ling Lam, Lisa Dreolini, Anthony Mathelier, Oliver Baker, Claudia Kuehne, Russell J Bonaguro, Jillian Smith, Chin-Vern Tan, Michelle Zhou, Daniel Goldowitz, Jan M Deussing, A Francis Stewart, Wyeth W Wasserman, Robert A Holt, Elizabeth M Simpson
Twenty-Seven Tamoxifen-Inducible iCre-Driver Mouse Strains for Eye and Brain, Including Seventeen Carrying a New Inducible-First Constitutive-Ready Allele
Genetics 211(4):1155–1177 (Feb 15, 2019)
DOI: 10.1534/genetics.119.301984

Serena Carra, Simon Alberti, Justin L.P. Benesch, Wilbert Boelens, Johannes Buchner, John A. Carver, Ciro Cecconi, Heath Ecroyd, Nikolai Gusev, Lawrence E. Hightower, Rachel E. Klevit, Hyun O. Lee, Krzysztof Liberek, Brent Lockwood, Angelo Poletti, Vincent Timmerman, Melinda E. Toth, Elizabeth Vierling, Tangchun Wu, Robert M. Tanguay
Small heat shock proteins: multifaceted proteins with important implications for life
Cell Stress and Chaperones 24(2):295–308 (Feb 13, 2019)
DOI: 10.1007/s12192-019-00979-z

Hilal Celikkaya, Mehmet Ilyas Cosacak, Christos Papadimitriou, Stanislava Popova, Prabesh Bhattarai, Srijeeta Nag Biswas, Tohid Siddiqui, Sabrina Wistorf, Isabel Nevado-Alcalde, Lisa Naumann, Violeta Mashkaryan, Kerstin Brandt, Uwe Freudenberg, Carsten Werner, Caghan Kizil
GATA3 Promotes the Neural Progenitor State but Not Neurogenesis in 3D Traumatic Injury Model of Primary Human Cortical Astrocytes
Front. Cell. Neurosci. 13 (Feb 12, 2019)
DOI: 10.3389/fncel.2019.00023

Christoph A Weber, David Zwicker, Frank Jülicher, Chiu Fan Lee
Physics of active emulsions
Rep. Prog. Phys. 82(6):064601 (Feb 7, 2019)
DOI: 10.1088/1361-6633/ab052b

Ivan Ivanov, Rafael B. Lira, T.‐Y. Dora Tang, Titus Franzmann, Adam Klosin, Lucas Caire da Silva, Anthony Hyman, Katharina Landfester, Reinhard Lipowsky, Kai Sundmacher, Rumiana Dimova
Directed Growth of Biomimetic Microcompartments
Adv. Biosys. 3(6) (Feb 6, 2019)
DOI: 10.1002/adbi.201800314

Friederike Bothe, Anne-Kathrin Deubel, Eliane Hesse, Benedict Lotz, Jürgen Groll, Carsten Werner, Wiltrud Richter, Sebastien Hagmann
Treatment of Focal Cartilage Defects in Minipigs with Zonal Chondrocyte/Mesenchymal Progenitor Cell Constructs
IJMS 20(3):653 (Feb 5, 2019)
DOI: 10.3390/ijms20030653

Ghada Hassan, Nina Forsman, Xing Wan, Leena Keurulainen, Luis M. Bimbo, Leena-Sisko Johansson, Nina Sipari, Jari Yli-Kauhaluoma, Ralf Zimmermann, Susanne Stehl, Carsten Werner, Per E. J. Saris, Monika Österberg, Vânia M. Moreira
Dehydroabietylamine-Based Cellulose Nanofibril Films: A New Class of Sustainable Biomaterials for Highly Efficient, Broad-Spectrum Antimicrobial Effects
ACS Sustainable Chem. Eng. 7(5):5002–5009 (Feb 4, 2019)
DOI: 10.1021/acssuschemeng.8b05658

Mirna Bilus, Maja Semanjski, Marko Mocibob, Igor Zivkovic, Nevena Cvetesic, Dan S. Tawfik, Agnes Toth-Petroczy, Boris Macek, Ita Gruic-Sovulj
On the Mechanism and Origin of Isoleucyl-tRNA Synthetase Editing against Norvaline
Journal of Molecular Biology 431(6):1284–1297 (Feb 1, 2019)
DOI: 10.1016/j.jmb.2019.01.029

Michal Grzybek, Alessandra Palladini, Vasileia I. Alexaki, Michal A. Surma, Kai Simons, Triantafyllos Chavakis, Christian Klose, Ünal Coskun
Comprehensive and quantitative analysis of white and brown adipose tissue by shotgun lipidomics
Molecular Metabolism 22:12–20 (Jan 30, 2019)
DOI: 10.1016/j.molmet.2019.01.009

Michael Schlierf, Ganggang Wang, Xiaojiang S Chen, Taekjip Ha
Hexameric helicase G40P unwinds DNA in single base pair steps
eLife 8 (Jan 28, 2019)
DOI: 10.7554/elife.42001

Kerstin Klinkert, Nicolas Levernier, Peter Gross, Christian Gentili, Lukas von Tobel, Marie Pierron, Coralie Busso, Sarah Herrman, Stephan W Grill, Karsten Kruse, Pierre Gönczy
Aurora A depletion reveals centrosome-independent polarization mechanism in Caenorhabditis elegans
eLife (Jan 25, 2019)
DOI: 10.7554/eLife.44552

Martin Hahmann, Claudio Hartmann, Lars Kegel, Wolfgang Lehner
Large-Scale Time Series Analytics
Datenbank Spektrum 19(1):17–29 (Jan 21, 2019)
DOI: 10.1007/s13222-018-00304-5

Kassiani Skouloudaki, Dimitrios K. Papadopoulos, Pavel Tomancak, Elisabeth Knust
The apical protein Apnoia interacts with Crumbs to regulate tracheal growth and inflation
PLoS Genet 15(1):e1007852 (Jan 15, 2019)
DOI: 10.1371/journal.pgen.1007852

Dimitrios K. Papadopoulos, Kassiani Skouloudaki, Ylva Engström, Lars Terenius, Rudolf Rigler, Christoph Zechner, Vladana Vukojević, Pavel Tomancak
Control of Hox transcription factor concentration and cell-to-cell variability by an auto-regulatory switch
Development 146(12) (Jan 14, 2019)
DOI: 10.1242/dev.168179

Felix Greiffenhagen, Johannes Peterleithner, Jakob Woisetschläger, Andreas Fischer, Johannes Gürtler, Jürgen Czarske
Discussion of laser interferometric vibrometry for the determination of heat release fluctuations in an unconfined swirl-stabilized flame
Combustion and Flame 201:315–327 (Jan 11, 2019)
DOI: 10.1016/j.combustflame.2018.12.019

Giorgio Fracasso, Yvonne Körner, David Thomas T Gonzales, T-Y. Dora Tang
In vitro gene expression and detergent-free reconstitution of active proteorhodopsin in lipid vesicles
Exp Biol Med (Maywood) 244(4):314–322 (Jan 11, 2019)
DOI: 10.1177/1535370218820290

Christian Kupsch, David Weik, Lukas Feierabend, Richard Nauber, Lars Buttner, Jurgen Czarske
Vector Flow Imaging of a Highly Laden Suspension in a Zinc-Air Flow Battery Model
IEEE Trans. Ultrason., Ferroelect., Freq. Contr. 66(4):761–771 (Jan 10, 2019)
DOI: 10.1109/tuffc.2019.2891514

Sebastian Dunst, Pavel Tomancak
Imaging Flies by Fluorescence Microscopy: Principles, Technologies, and Applications
Genetics 211(1):15–34 (Jan 9, 2019)
DOI: 10.1534/genetics.118.300227

Stefan Rothe, Hannes Radner, Nektarios Koukourakis, Jürgen W. Czarske
Transmission Matrix Measurement of Multimode Optical Fibers by Mode-Selective Excitation Using One Spatial Light Modulator
Applied Sciences 9(1):195 (Jan 9, 2019)
DOI: 10.3390/app9010195

Titus M. Franzmann, Simon Alberti
Protein Phase Separation as a Stress Survival Strategy
Cold Spring Harb Perspect Biol 11(6):a034058 (Jan 7, 2019)
DOI: 10.1101/cshperspect.a034058

Albert Thommen, Steffen Werner, Olga Frank, Jenny Philipp, Oskar Knittelfelder, Yihui Quek, Karim Fahmy, Andrej Shevchenko, Benjamin M Friedrich, Frank Jülicher, Jochen C Rink
Body size-dependent energy storage causes Kleiber’s law scaling of the metabolic rate in planarians
eLife 8:e38187 (Jan 4, 2019)
DOI: 10.7554/eLife.38187

Claudio Hartmann, Franziska Ressel, Martin Hahmann, Dirk Habich, Wolfgang Lehner
CSAR: the cross-sectional autoregression model for short and long-range forecasting
Int J Data Sci Anal 8(2):165–181 (Jan 3, 2019)
DOI: 10.1007/s41060-018-00169-7

2018

4 publication(s) listed

Alexander Mietke, Frank Jülicher, Ivo F. Sbalzarini
Self-organized shape dynamics of active surfaces
Proc. Natl. Acad. Sci. U.S.A. 116(1):29–34 (Dec 20, 2018)
DOI: 10.1073/pnas.1810896115

Louise M. Jawerth, Mahdiye Ijavi, Martine Ruer, Shambaditya Saha, Marcus Jahnel, Anthony A. Hyman, Frank Jülicher, Elisabeth Fischer-Friedrich
Salt-Dependent Rheology and Surface Tension of Protein Condensates Using Optical Traps
Phys. Rev. Lett. 121, 258101 (Dec 18, 2018)
DOI: 10.1103/PhysRevLett.121.258101

Peter Gross, K. Vijay Kumar, Nathan W. Goehring, Justin S. Bois, Carsten Hoege, Frank Jülicher, Stephan W. Grill
Guiding self-organized pattern formation in cell polarity establishment
Nature Physics 15, 293–300 (Dec 3, 2018)
DOI: 10.1038/s41567-018-0358-7

Ralf Zimmermann, Judith Delius, Jens Friedrichs, Susanne Stehl, Thomas Hofmann, Christian Hannig, Melanie Rehage, Carsten Werner, Matthias Hannig
Impact of oral astringent stimuli on surface charge and morphology of the protein-rich pellicle at the tooth–saliva interphase
Colloids and Surfaces B: Biointerfaces 174:451–458 (Nov 16, 2018)
DOI: 10.1016/j.colsurfb.2018.11.028