PoL – Physics of Life | Publications


Carolina Parada, Samhita P. Banavar, Parisa Khalilian, Stephane Rigaud, Arthur Michaut, Yucen Liu, Dennis Manjaly Joshy, Otger Campàs, Jerome Gros
Mechanical feedback defines organizing centers to drive digit emergence
Dev Cell 57(7) 854–866.e6 doi: 10.1016/j.devcel.2022.03.004 (11 April 2022)

Charlie Duclut, Joris Paijmans, Mandar M. Inamdar, Carl D. Modes, Frank Jülicher
Active T1 Transitions in Cellular Networks
Eur. Phys. J. E. 45(29) doi: 10.1140/epje/s10189-022-00175-5 (23 March 2022)

Charlie Duclut, Aboutaleb Amiri, Joris Paijmans, Frank Jülicher
Coarse-grained curvature tensor on polygonal surfaces
SciPost Phys. Core 5, 011 doi: 10.21468/SciPostPhysCore.5.1.011 (11 March 2022)

Tyler S. Harmon and Frank Jülicher
Molecular Assembly Lines in Active Droplets
Phys. Rev. Lett. 128, 108102 doi: 10.1103/PhysRevLett.128.108102 (9 March 2022)

Roman Renger, Jose A. Morin, Regis Lemaitre, Martine Ruer-Gruss, Frank Jülicher, Andreas Hermann and Stephan W. Grill
Co-condensation of Proteins with Single- and Double-stranded DNA
Proc. Natl. Acad. Sci. USA 119(10), e2107871119 doi: 10.1073/pnas.2107871119 (1 March 2022)

Neharika Chamachi, Andreas Hartmann, Mai Quynh Ma , Anna Svirina, Georg Krainer, Michael Schlierf
Chaperones Skp and SurA dynamically expand unfolded OmpX and synergistically disassemble oligomeric aggregates
PNAS 119 (9) e2118919119 doi: 10.1073/pnas.2118919119 (25 February 2022)

Veit Krause, Axel Voigt
Deformable active nematic particles and emerging edge currents in circular confinements
Eur. Phys. J. E 45, 14 doi: 10.1140/epje/s10189-022-00162-w (17 February 2022)

Suryanarayana Maddu, Dominik Sturm, Christian L. Müller and Ivo F. Sbalzarini
Inverse Dirichlet weighting enables reliable training of physics informed neural networks
Machine Learning: Science and Technology, Volume 3, Number 1 doi: 10.1088/2632-2153/ac3712 (15 February 2022)

Juan M Iglesias-Artola, Björn Drobot, Mrityunjoy Kar, Anatol Fritsch, Hannes Mutschler, T-Y Dora Tang, Moritz Kreysing
Charge-density reduction promotes ribozyme activity in RNA-peptide coacervates via RNA fluidization and magnesium partitioning
Nature Chemistry 2022 doi: 10.1038/s41557-022-00890-8 (14 February 2022)

Maria Romanova-Michaelides, Zena Hadjivasiliou, Daniel Aguilar-Hidalgo, Dimitris Basagiannis, Carole Seum, Marine Dubois, Frank Jülicher, Marcos Gonzalez-Gaitan
Morphogen gradient scaling by recycling of intracellular Dpp
Nature 602, 287–293 doi: 10.1038/s41586-021-04346-w (10 February 2022)

Benjamin A. Dalton, David Oriola, Franziska Decker, Frank Jülicher, Jan Brugués
A Gelation Transition Enables the Self-organization of Bipolar Metaphase Spindles
Nat. Phys. doi: 10.1038/s41567-021-01467-x (10 February 2022)

Jose A. Morin, Sina Wittmann, Sandeep Choubey, Adam Klosin, Stefan Golfier, Anthony A. Hyman, Frank Jülicher, Stephan W. Grill
Sequence-dependent Surface Condensation of a Pioneer Transcription Factor on DNA
Nat. Phys. doi: 10.1038/s41567-021-01462-2 (3 February 2022)

Jesse V. Veenvliet, Pierre-François Lenne, David A. Turner, Iftach Nachman, Vikas Trivedi
Sculpting with stem cells: how models of embryo development take shape
Development 148 (24): dev192914 doi: 10.1242/dev.192914 (15 December 2021)

Karl B. Hoffmann, Ivo F. Sbalzarini
Estimation of unordered core size using a robustness measure for topological defects in discretized orientation and vector fields
Proc. Appl. Math. Mech., 21(1): e202100105 doi: 10.1002/pamm.202100105 (14 December 2021)

Robert Kuschmierz, Elias Scharf, David F. Ortegón-González, Tom Glosemeyer, Jürgen W. Czarske
Ultra-thin 3D lensless fiber endoscopy using diffractive optical elements and deep neural networks
Light: Advanced Manufacturing 2, Article number: 30 doi: 10.37188/lam.2021.030 (6 December 2021)

Stefano Bo, Lars Hubatsch, Jonathan Bauermann, Christoph A. Weber, Frank Jülicher
Stochastic dynamics of single molecules across phase boundaries
Phys. Rev. Research 3, 043150, doi: 10.1103/PhysRevResearch.3.043150 (2 December 2021)

Xueping Zhao, Giacomo Bartolucci, Alf Honigmann, Frank Jülicher, Christoph A Weber
Thermodynamics of Wetting, Prewetting and Surface Phase Transitions with Surface Binding
New J. Phys. 23, 123003, doi: 10.1088/1367-2630/ac320b (1 December 2021)

D. Wenzel and A. Voigt
Multiphase field models for collective cell migration
Phys. Rev. E 104, 054410 doi: 10.1103/PhysRevE.104.054410 (24 November 2021)

Luo, Weizhou; Goebel, Eva; Reipschläger, Patrick; Ellenberg, Mats Ole;
Dachselt, Raimund
Exploring and Slicing Volumetric Medical Data in Augmented Reality Using a
Spatially-Aware Mobile Device

In 2021 IEEE International Symposium on Mixed and Augmented Reality Adjunct (ISMAR-Adjunct). ISMAR '21, Bari, Italy. doi: 10.1109/ISMAR-Adjunct54149.2021.00076 (13 November 2021)

Dalileh Nabi1, Hauke Drechsler, Johannes Pschirer, Franz Korn, Nadine Schuler, Stefan Diez, Rolf Jessberger, Mariola Chacón
CENP-V is required for proper chromosome segregation through interaction with spindle microtubules in mouse oocytes.
Nat Commun 12, 6547 doi: 10.1038/s41467-021-26826-3 (11 November 2021)

Iliya D. Stoev, Benjamin Seelbinder, Elena Erben, Nicola Maghelli, Moritz Kreysing
Highly sensitive force measurements in an optically generated, harmonic hydrodynamic trap
eLight, 1, 7 doi: 10.1186/s43593-021-00007-7 (23 October 2021)

Weizhou Luo, Eva Goebel, Patrick Reipschläger, Mats Ole Ellenberg, Raimund Dachselt
Demonstrating Spatial Exploration and Slicing of Volumetric Medical Data in Augmented Reality with Handheld Devices
In 2021 IEEE International Symposium on Mixed and Augmented Reality. ISMAR '21, Bari, Italy. 2021. ISMAR21-Program-Demos (6 October 2021)

Sara N. Nagelberg✳︎, Jan F. Totz✳︎, Matthäus Mittasch, Vishnu Sresht, Lukas Zeininger, Timothy M Swager, Moritz Kreysing, Mathias Kolle
Actuation of Janus Emulsion Droplets via Optothermally Induced Marangoni Forces
Phys Rev Lett 127(14):144503 doi: 10.1103/PhysRevLett.127.144503 (1 October 2021)

Charlie Duclut︎, Joris Paijmans, Mandar M Inamdar, Carl D. Modes, Frank Jülicher
Nonlinear Rheology of Cellular Networks
Cells and Development, 203746 doi: 10.1016/j.cdev.2021.203746 (27 September 2021)

Singh, A., Incardona, P. & Sbalzarini, I.F.
A C++ expression system for partial differential equations enables generic simulations of biological hydrodynamics
Eur. Phys. J. E 44, 117 (2021). doi: 10.1140/epje/s10189-021-00121-x (23 September 2021)

Anatol W. Fritsch, Andrés F. Diaz-Delgadillo, Omar Adame-Arana, Carsten Hoege, Matthäus Mittasch, Moritz Kreysing, Mark Leaver, Anthony A. Hyman, Frank Jülicher, and Christoph A. Weber
Local thermodynamics govern formation and dissolution of Caenorhabditis elegans P granule condensates
PNAS September 14, 2021 118 (37) e2102772118 doi: 10.1073/pnas.2102772118 (14 September 2021)

Elena Erben, Benjamin Seelbinder, Iliya D. Stoev, Sergei Klykov, Nicola Maghelli, Moritz Kreysing
Feedback-based positioning and diffusion suppression of particles via optical control of thermoviscous flows
Opt Express, 29(19):30272–30283 doi: 10.1364/OE.432935 (13 September 2021)

Lange S, Friedrich BM
Network permeability changes according to a quadratic power law upon removal of a single edge
EPL, 134 (2021) 64002 doi: 10.1209/0295-5075/134/64002 (2 September 2021)

Ondřej Kucera, Valerie Siahaan, Daniel Janda, Sietske H. Dijkstra, Eliška Pilátová, Eva Zatecka, Stefan Diez, Marcus Braun, Zdenek Lansky
Anillin propels myosin-independent constriction of actin rings
Nat Commun 12, 4595 doi: 10.1038/s41467-021-24474-1 (28 July 2021)

Rank M, Voigt A
Active flows on curved surfaces
Physics of Fluids 33, 072110 doi: 10.1063/5.0056099 (21 July 2021)

Thomas Quail, Stefan Golfier, Maria Elsner, Keisuke Ishihara, Vasanthanarayan Murugesan, Roman Renger, Frank Jülicher & Jan Brugués
Force generation by protein–DNA co-condensation
Nat. Phys. doi: 10.1038/s41567-021-01285-1 (8 July 2021)

Pester, Britta; Winke, Oliver; Ligges, Carolin; Dachselt, Raimund; Gumhold,
Immersive 3D Visualization of Multi-Modal Brain Connectivity
In EuroVis Workshop on Visual Analytics (EuroVA). EuroVA '21 The Eurographics
Association. doi: 10.2312/eurova.20211091 (14 June 2021)

Nesrine Khouzami, Lars Schütze, Pietro Incardona, Landfried Kraatz, Tina Subic, Jeronimo Castrillon, Ivo F. Sbalzarini
The OpenPME Problem Solving Environment for Numerical Simulations
In Proc. Intl. Conf. on Computational Science (ICCS), volume 12742 of Lecture Notes in Computer Science, pages 614–627 doi: 10.1007/978-3-030-77961-0_49 (9 June 2021)

Zeyu Gao, Hannes Radner, Lars Büttner, Hongwei Ye, Xinyang Li, Jürgen Czarske
Distortion correction for particle image velocimetry using multiple-input deep convolutional neural network and Hartmann-Shack sensing
Opt Express 29(12):18669–18687 doi: 10.1364/OE.419591 (7 June 2021)

Dr. Justus A. Kromer, Dr. Andrea Auconi, Prof. Dr. Benjamin M. Friedrich
Composite search of active particles in three-dimensional space based on non-directional cues
doi: 10.1002/cnma.202100156 (26 May 2021)

Kamran Hosseini,Annika Frenzel, Elisabeth Fischer-Friedrich
EMT changes actin cortex rheology in a cell-cycle-dependent manner
Biophysical Journal, In Press, Corrected Proof doi: 10.1016/j.bpj.2021.05.006 (20 May 2021)

Chartier NT, Mukherjee A, Pfanzelter J, Fürthauer S, Larson BT, Fritsch AW, Amini R, Kreysing M, Jülicher F, Grill SW
A hydraulic instability drives the cell death decision in the nematode germline
Nature Physics, doi: 10.1038/s41567-021-01235-x (20 May 2021)

Middelkoop TC, Garcia-Baucells J, Quintero-Cadena P, Pimpale LG, Yazdi S, Sternberg PW, Gross P, Grill SW
CYK-1/Formin activation in cortical RhoA signaling centers promotes organismal left–right symmetry breaking
PNAS May 18, 2021 118 (20) e2021814118 doi: 10.1073/pnas.2021814118 (18 May 2021)

Jiawei Sun, Nektarios Koukourakis, Jochen Guck, Jürgen W. Czarske
Rapid computational cell-rotation around arbitrary axes in 3D with multi-core fiber
Biomed. Opt. Express 12(6):3423–3437 doi: 10.1364/BOE.423035 (17 May 2021)

Charlie Duclut, Jacques Prost, Frank Jülicher
Hydraulic and Electric Control of Cell Spheroids
PNAS May 11, 2021 118 (19) e2021972118, doi: 10.1073/pnas.2021972118 (11 May 2021)

Striggow F, Nadporozhskaia L, Friedrich BM, Schmidt OG, Medina-Sánchez M
Micromotor-mediated sperm constrictions for improved swimming performance
Eur. Phys. J. E 44:67, 20221 doi: 10.1140/epje/s10189-021-00050-9 (11 May 2021)

Scarselli D, Budanur NB, Timme M, Hof B
Discontinuous epidemic transition due to limited testing.
Nat Commun 12, 2586, doi: 10.1038/s41467-021-22725-9 (10 May 2021)

Luo W, Lehmann A, Yang Y, Dachselt R
Investigating Document Layout and Placement Strategies for Collaborative Sensemaking in Augmented Reality.
Extended Abstracts of the 2021 CHI Conference on Human Factors in Computing Systems (CHI EA ’21). Association for Computing Machinery, Article 456, 1–7. doi: 10.1145/3411763.3451588 (8 May 2021)

Satkowski M, Büschel W, Dachselt R
Experiences with User Studies in Augmented Reality.
CHI 2021 Workshop on Evaluating User Experiences in Mixed Reality, arXiv:2104.03795 (7 May 2021)

Ens B, Bach B, Cordeil M, Engelke U, Serrano M, Willett W, Prouzeau A, Anthes C, Büschel W, Dunne C, Dwyer T, Grubert J, Haga JH, Kirshenbaum N, Kobayashi D, Lin T, Olaosebikan M, Pointecker F, Saffo D, Saquib N, Schmalstieg S, Albers Szafir D, Whitlock M, Yang Y
Grand Challenges in Immersive Analytics.
Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems (CHI ’21). Association for Computing Machinery, Article 459, 1–17. doi: 10.1145/3411764.3446866 (6 May 2021)

Satkowski M, Dachselt R
Investigating the Impact of Real-World Environments on the Perception of 2D Visualizations in Augmented Reality.
Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems (CHI ’21). Association for Computing Machinery, Article 522, 1–15. doi: 10.1145/3411764.3445330 (6 May 2021)

Langner R, Satkowski M, Büschel W, Dachselt R
MARVIS: Combining Mobile Devices and Augmented Reality for Visual Data Analysis.
Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems (CHI ’21). Association for Computing Machinery, Article 468, 1–17. doi: 10.1145/3411764.3445593 (6 May 2021)

Büschel W, Lehmann A, Dachselt R
MIRIA: A Mixed Reality Toolkit for the In-Situ Visualization and Analysis of Spatio-Temporal Interaction Data.
Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems (CHI ’21). Association for Computing Machinery, Article 470, 1–15. doi: 10.1145/3411764.3445651 (6 May 2021)

Jiawei Sun, Nektarios Koukourakis, and Jürgen W. Czarske
Complex Wavefront Shaping through a Multi-Core Fiber
Appl. Sci. 2021, 11, 3949 doi: 10.3390/app11093949 (27 April 2021)

Samhita P. Banavar, Emmet K. Carn, Payam Rowghanian, Georgina Stooke‑Vaughan, Sangwoo Kim, Otger Campàs
Mechanical control of tissue shape and morphogenetic flows during vertebrate body axis elongation
Scientific Reports 11 (1), 1–14 (article on nature.com) (21 April 2021)

Suryanarayana Maddu, Bevan L. Cheeseman, Christian L. Müller, Ivo F. Sbalzarini
Learning physically consistent differential equation models from data using group sparsity
Phys. Rev. E 103, 042310 doi: 10.1103/PhysRevE.103.042310 (13 April 2021)

Sangwoo Kim, Marie Pochitaloff, Georgina A. Stooke-Vaughan, Otger Campàs
Embryonic tissues as active foams
Nat. Phys. doi: 10.1038/s41567-021-01215-1 (12 April 2021)

Lange S, Friedrich BM
Sperm chemotaxis in marine species is optimal at physiological flow rates according theory of filament surfing
PLoS Comp. Biol., 17(4): e1008826 doi: 10.1371/journal.pcbi.1008826 (12 April 2021)

Solovev A, Friedrich BM
Lagrangian Mechanics of Active Systems
Eur. Phys. J. E, 44:49, 2021 doi: 10.1140/epje/s10189-021-00016-x (8 April 2021)

Novak M, Friedrich BM
Bayesian gradient sensing in the presence of rotational diffusion
New J. Phys., 23:043026 doi: 10.1088/1367-2630/abdb70 (8 April 2021)

Debarghya Banerjee, Vincenzo Vitelli, Frank Jülicher, Piotr Surówka
Active Viscoelasticity of Odd Materials
Phys. Rev. Lett. 126, 138001, doi: 10.1103/PhysRevLett.126.138001 (29 March 2021)

Dye NA, Popović M, Venkatesan Iyer K, Fuhrmann JF, Piscitello-Gómez R, Eaton S, Jülicher F
Self-organized patterning of cell morphology via mechanosensitive feedback
eLife 2021;10:e57964 doi: 10.7554/eLife.57964 (26 March 2021)

K. Venkatesan Iyer, Anna Taubenberger, Salma Ahmed Zeidan, Natalie A. Dye, Suzanne Eaton, Frank Jülicher
Apico-Basal Cell Compression Regulates Lamin A/C Levels in Epithelial Tissues
Nat Commun 12, 1756, doi: 10.1038/s41467-021-22010-9 (25 March 2021)

Jose Negrete Jr, Iván M Lengyel, Laurel Rohde, Ravi A Desai, Andrew C Oates, Frank Jülicher
Theory of Time Delayed Genetic Oscillations with External Noisy Regulation
New J. Phys. 23, 033030, doi: 10.1088/1367-2630/abd80b (15 March 2021)

Marko Popović, Valentin Druelle, Natalie A Dye, Frank Jülicher, Matthieu Wyart
Inferring the flow properties of epithelial tissues from their geometry
New J. Phys. 23 033004, doi: 10.1088/1367-2630/abcbc7 (10 March 2021)

Lennart Hilbert, Yuko Sato, Ksenia Kuznetsova, Tommaso Bianucci, Hiroshi Kimura, Frank Jülicher, Alf Honigmann, Vasily Zaburdaev, Nadine L. Vastenhouw
Transcription Organizes Euchromatin via Microphase Separation
Nat Commun 12, 1360, doi: 10.1038/s41467-021-21589-3 (1 March 2021)

Suryanarayana Maddu, Dominik Sturm, Bevan L. Cheeseman, Christian L. Müller, Ivo F. Sbalzarini
Learning Computable Models From Data
WCCM-ECCOMAS2020 doi: 10.23967/wccm-eccomas.2020.190 (March 2021)

Reipschläger P, Flemisch T, Dachselt R
Personal Augmented Reality for Information Visualization on Large Interactive Displays.
IEEE Transactions on Visualization and Computer Graphics, 27 (2), 1182–1192, doi: 10.1109/TVCG.2020.3030460 (Feb 2021)

Samhita P Banavar, Michael Trogdon, Brian Drawert, Tau-Mu Yi, Linda R Petzold, Otger Campàs
Coordinating cell polarization and morphogenesis through mechanical feedback
PLoS computational biology 17 (1), e1007971 doi: 10.1371/journal.pcbi.1007971 (28 January 2021)

James Giammona, Otger Campàs
Physical constraints on early blastomere packings
PLoS Computational Biology 17 (1), e1007994 doi: 10.1371/journal.pcbi.1007994 (26 January 2021)

Hui-Shun Kuan, Wolfram Pönisch, Frank Jülicher, Vasily Zaburdaev
Continuum Theory of Active Phase Separation in Cellular Aggregates.
Phys. Rev. Lett. 126, 018102, 10.1103/PhysRevLett.126.018102 (4 January 2021)

Jordi Comelles, Soumya Ss, Linjie Lu, Emilie Le Maout, S Anvitha, Guillaume Salbreux, Frank Jülicher, Mandar M Inamdar, Daniel Riveline
Epithelial Colonies In Vitro Elongate through Collective Effects
eLife 10:e57730, doi: 10.7554/eLife.57730 (4 January 2021)

Benjamin Dalton, Ivo F. Sbalzarini, Itsuo Hanasaki
Fundamentals of the logarithmic measure for revealing multimodal diffusion.
Biophys J, Art. No. doi: 10.1016/j.bpj.2021.01.001 (January 2021)

Karl B. Hoffmann and Ivo F. Sbalzarini
Robustness of topological defects in discrete domains.
Phys. Rev. E, 103:012602 doi: 10.1103/PhysRevE.103.012602 (January 2021)

Dahmann C, Classen AK
Charting the unknown currents of cellular flows and forces.
Development, 147(24):dev186403. doi: 10.1242/dev.186403 (21 Dec 2020)

Louise Jawerth, Elisabeth Fischer-Friedrich, Suropriya Saha, Jie Wang, Titus Franzmann, Xiaojie Zhang, Jenny Sachweh, Martine Ruer, Mahdiye Ijavi, Shambaditya Saha, Julia Mahamid, Anthony A. Hyman, Frank Jülicher
Protein Condensates as Aging Maxwell Fluids
Science 370(6522):1317–1323 doi: 10.1126/science.aaw4951 (11 December 2020)

André Scholich, Simon Syga, Hernán Morales-Navarrete, Fabián Segovia-Miranda, Hidenori Nonaka, Kirstin Meyer, Walter de Back, Lutz Brusch, Yannis Kalaidzidis, Marino Zerial, Frank Jülicher, Benjamin M. Friedrich
Quantification of nematic cell polarity in three-dimensional tissues
PLoS Comput Biol; 16(12): e1008412 doi: 10.1371/journal.pcbi.1008412 (10 December 2020)

Sui L, Dahmann C
Increased lateral tension is sufficient for epithelial folding in Drosophila.
Development, 147(23):dev194316. doi: 10.1242/dev.194316 (4 Dec 2020)

Aryaman Gupta, Pietro Incardona, Ata Deniz Aydin, Stefan Gumhold, Ulrik Günther, Ivo F. Sbalzarini
An Architecture for Interactive In Situ Visualization and its Transparent Implementation in OpenFPM
ISAV'20 In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization Pages 20–26 doi: 10.1145/3426462.3426472 (November 2020)

Omar Adame-Arana, Christoph A. Weber, Vasily Zaburdaev, Jacques Prost, Frank Jülicher
Liquid Phase Separation Controlled by pH
Biophys J. 119(8):1590–1605 doi: 10.1016/j.bpj.2020.07.044 (20 October 2020)

Kamran Hosseini, Leon Sbosny, Ina Poser, Elisabeth Fischer-Friedrich
Binding Dynamics of α-Actinin-4 in Dependence of Actin Cortex Tension
Biophys J., 119(6):1091–1107 doi: 10.1016/j.bpj.2020.07.031 (15 September 2020)

Ilia Zhernov, Stefan Diez, Marcus Braun, Zdenek Lansky
Intrinsically Disordered Domain of Kinesin-3 Kif14 Enables Unique Functional Diversity
Current Biology 30, 1–10 doi: 10.1016/j.cub.2020.06.039 (7 September 2020)

Ingo Nitschke, Sebastian Reuther, Axel Voigt
Liquid crystals on deformable surfaces
Proc. R. Soc. A.47620200313 doi: 10.1098/rspa.2020.0313 (2 September 2020)

Azaam Aziz, Stefano Pane, Veronica Iacovacci, Nektarios Koukourakis, Jürgen Czarske, Arianna Menciassi, Mariana Medina-Sánchez, and Oliver G. Schmidt
Medical Imaging of Microrobots: Toward In Vivo Applications
CS Nano 2020, 14, 9, 10865–10893 doi: 10.1021/acsnano.0c05530 (1 September 2020)

Ulrik Günther, Kyle I.S. Harrington, Raimund Dachselt, Ivo F. Sbalzarini
Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality
In Proc. BioImageComputing workshop at ECCV 2020, European Conference on Computer Vision, online. arXiv:2005.00387v2 (August 2020)

Kayvan Forouhesh Tehrani, Nektarios Koukourakis, Jürgen Czarske, Luke J Mortensen
In situ measurement of the isoplanatic patch for imaging through intact bone
J. Biophotonics. Accepted Author Manuscript. doi: 10.1002/jbio.202000160 (25 August 2020)

Sebastian Reuther, Ingo Nitschke, Axel Voigt
A numerical approach for fluid deformable surfaces
Journal of Fluid Mechanics, 900, R8. doi: 10.1017/jfm.2020.564 (12 August 2020)

Georg Krainer, Andreas Hartmann, Vadim Bogatyr, Janni Nielsen, Michael Schlierf, Daniel E. Otzen
SDS-induced multi-stage unfolding of a small globular protein through different denatured states revealed by single-molecule fluorescence
Chem. Sci. 2020, Advance Article doi: 10.1039/D0SC02100H (10 August 2020)

Kamran Hosseini, Anna Taubenberger, Carsten Werner, Elisabeth Fischer-Friedrich
EMT-Induced Cell-Mechanical Changes Enhance Mitotic Rounding Strength
Adv. Sci. 2020, 2001276. doi: 10.1002/advs.202001276 (9 August 2020)

David Oriola, Frank Jülicher, Jan Brugués
Active forces shape the metaphase spindle through a mechanical instability
PNAS 117(28) 16154–16159 doi: 10.1073/pnas.2002446117 (14 July 2020)

Leonard Schärfen, Miloš Tišma, Michael Schlierf
Fast, simultaneous tagging and mutagenesis of genes on bacterial chromosomes
ACS Synth. Biol. 2020, 9, 8, 2203–2207 doi: 10.1021/acssynbio.0c00202 (9 July 2020)

Mohammadreza Bahadorian, Christoph Zechner, Carl D. Modes
Gift of gab: Probing the limits of dynamic concentration-sensing across a networkof communicating cells
Phys. Rev. Research 2, 023403 doi: 10.1103/PhysRevResearch.2.023403 (25 June 2020)

Verena Henrichs, Lenka Grycova, Cyril Barinka, Zuzana Nahacka, Jiri Neuzil, Stefan Diez, Jakub Rohlena, Marcus Braun, Zdenek Lansky
Mitochondria-adaptor TRAK1 promotes kinesin-1 driven transport in crowded environments
Nat Commun 11, 3123 doi: 10.1038/s41467-020-16972-5 (19 June 2020)

Marcus Braun, Stefan Diez, Zdenek Lansky
Cytoskeletal organization through multivalent interactions
J Cell Sci 133, jcs234393 doi: 10.1242/jcs.234393 (15 June 2020)

Alice Cezanne, Janelle Lauer, Anastasia Solomatina, Ivo F Sbalzarini, Marino Zerial
A non-linear system patterns Rab5 GTPase on the membrane
eLife 2020;9:e54434 doi: 10.7554/eLife.54434 (8 June 2020)

Giuseppe Antonacci, Timon Beck, Alberto Bilenca, Jürgen Czarske, Kareem Elsayad, Jochen Guck, Kyoohyun Kim, Benedikt Krug, Francesca Palombo, Robert Prevedel, Giuliano Scarcelli
Recent progress and current opinions in Brillouin microscopy for life science applications
Biophys Rev doi: 10.1007/s12551-020-00701-9 (26 May 2020)

Aniruddha Mitra, Laura Meißner, Rojapriyadharshini Gandhimathi, Roman Renger, Felix Ruhnow, Stefan Diez
Kinesin-14 motors drive a right-handed helical motion of antiparallel microtubules around each other
Nat Commun 11, 2565 doi: 10.1038/s41467-020-16328-z (22 May 2020)

Patrick Reipschläger, Severin Engert, Raimund Dachselt
Augmented Displays: Seamlessly Extending Interactive Surfaces With Head-Mounted Augmented Reality.
In Extended Abstracts of the 2020 CHI Conference on Human Factors in Computing Systems (CHI EA '20). Association for Computing Machinery, New York, NY, USA, 1–4. doi: 10.1145/3334480.3383138 (April 2020)

Wolfgang Büschel, Georg Eckert, Raimund Dachselt
Challenges in Collaborative Immersive Visualization.
CHI 2020 Workshop on Immersive Analytics: Envisioning Future Productivity for Immersive Analytics. (April 2020)

Marcel Mokbel, Kamran Hosseini, Sebastian Aland, Elisabeth Fischer-Friedrich
The Poisson Ratio of the Cellular Actin Cortex Is Frequency Dependent.
Biophys J. 118(8):1968–1976. doi:10.1016/j.bpj.2020.03.002 (21 Apr 2020)

Justus A. Kromer, Noelia de la Cruz, Benjamin M. Friedrich
Chemokinetic Scattering, Trapping, and Avoidance of Active Brownian Particles
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Liyuan Sui and Christian Dahmann
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Marcus Michel and Christian Dahmann
Tissue mechanical properties modulate cell extrusion in the Drosophila abdominal epidermis
Development 147(5) dev179606. doi: 10.1242/dev.179606 (11 March 2020)

Nora Molkenthin, Steffen Mühle, Antonia S. J. S. Mey, Marc Timme
Self-organized emergence of folded protein-like network structures from geometric constraints.
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Georg Krainer, Mathias Schenkel, Andreas Hartmann, Dorna Ravamehr-Lake, Charles M. Deber, Michael Schlierf
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Adam Klosin, Florian Oltsch, Tyler Harmon, Alf Honigmann, Frank Jülicher, Anthony Hyman, Christoph Zechner
Phase separation provides a mechanism to reduce noise in cells.
Science 367(6476):464–468. doi: 10.1126/science.aav6691 (24 Jan 2020)

Kaushikaram Subramanian, Martin Weigert, Oliver Borsch, Heike Petzold, Alfonso Garcia-Ulloa, Eugene W Myers, Marius Ader, Irina Solovei, Moritz Kreysing
Rod nuclear architecture determines contrast transmission of the retina and behavioral sensitivity in mice
eLife 2019;8:e49542 doi: 10.7554/eLife.49542 (11 Dec 2019)

Hauke Drechsler, Yong Xu, Veikko F. Geyer, Yixin Zhang, Stefan Diez
Multivalent electrostatic microtubule-interactions of synthetic peptides are sufficient to mimic advanced MAP-like behaviour
Mol Biol Cell 30(24), 2953–2968 doi: 10.1091/mbc.E19-05-0247 (14 Nov 2019)

Oliver Beutel, Riccardo Maraspini, Karina Pombo-García, Cécilie Martin-Lemaitre, Alf Honigmann
Phase Separation of Zonula Occludens Proteins Drives Formation of Tight Junctions
Cell 179(4), 923-936.e11 doi: 10.1016/j.cell.2019.10.011 (31 Oct 2019)

Alexander Mietke, V. Jemseena, K. Vijay Kumar, Ivo F. Sbalzarini, Frank Jülicher
Minimal model of cellular symmetry breaking
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Aryaman Gupta, Ulrik Günther, Pietro Incardona, Ata Deniz Aydin, Raimund Dachselt, Stefan Gumhold, Ivo F. Sbalzarini
A Proposed Framework for Interactive Virtual Reality In Situ Visualization of Parallel Numerical Simulations
IEEE 9th Symposium on Large Data Analysis and Visualization (LDAV), Vancouver, BC, Canada, 2019, pp. 95–96, doi: 10.1109/LDAV48142.2019.8944368 (21 Oct 2019)

Johannes Baumgart, Marcel Kirchner, Stefanie Redemann, Alec Bond, Jeffrey Woodruff, Jean-Marc Verbavatz, Frank Jülicher, Thomas Müller-Reichert, Anthony A. Hyman, Jan Brugués
Soluble tubulin is significantly enriched at mitotic centrosomes
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Moritz Kreysing
Probing the Functional Role of Physical Motion in Development
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Azaam Aziz, Mariana Medina-Sánchez, Nektarios Koukourakis, Jiawei Wang, Robert Kuschmierz, Hannes Radner, Jürgen W. Czarske, Oliver G. Schmidt
Real-Time IR Tracking of Single Reflective Micromotors through Scattering Tissues
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Jana Sievers, Stefan Zschoche, Ron Dockhorn, Jens Friedrichs, Carsten Werner, Uwe Freudenberg
Temperature-Induced Mechanomodulation of Interpenetrating Networks of Star Poly(ethylene glycol)–Heparin and Poly(N-isopropylacrylamide)
ACS Appl. Mater. Interfaces 2019, 11, 45, 41862–41874 doi: 10.1021/acsami.9b11719 (7 Oct 2019)

Benedikt Krug, Nektarios Koukourakis, and Juergen W. Czarske
Impulsive stimulated Brillouin microscopy for non-contact, fast mechanical investigations of hydrogels
Optics Express 27 (19), 26910–26923 doi: 10.1364/OE.27.026910 (16 Sep 2019)

Malte Schröder and Marc Timme
Asymmetry in repeated isotropic rotations
Phys. Rev. Research 1, 023012 doi: 10.1103/PhysRevResearch.1.023012 (10 Sep 2019)

Charlie Duclut, Niladri Sarkar, Jacques Prost, Frank Jülicher
Fluid pumping and active flexoelectricity can promote lumen nucleation in cell assemblies
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Axel Voigt
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Valerie Siahaan, Jochen Krattenmacher, Anthony A. Hyman, Stefan Diez, Amayra Hernández-Vega, Zdenek Lansky, Marcus Braun
Kinetically distinct phases of tau on microtubules regulate kinesin motors and severing enzymes
Nat. Cell Biol. 21, 1086–1092, doi: 10.1038/s41556-019-0374-6 (2 Sep 2019)

Caren Norden, Virginie Lecaudey
Collective cell migration: general themes and new paradigms
Curr Opin Genet Dev. 57, 54–60. doi: 10.1016/j.gde.2019.06.013 (18 Aug 2019)

Xiaozhu Zhang, Sarah Hallerberg, Moritz Matthiae, Dirk Witthaut, Marc Timme
Fluctuation-Induced Distributed Resonances in Oscillatory Networks
Science Adv. 5:eaav1027 doi: 10.1126/sciadv.aav1027 (31 July 2019)

Mathieu Richard, Carles Blanch-Mercader, Hajer Ennomani, Wenxiang Cao, Enrique M. De La Cruz, Jean-François Joanny, Frank Jülicher, Laurent Blanchoin, and Pascal Martin
Active cargo positioning in antiparallel transport networks
PNAS 116 (30) 14835–14842 doi: 10.1073/pnas.1900416116 (9 July 2019)

Hernán Morales-Navarrete, Hidenori Nonaka, André Scholich, Fabián Segovia-Miranda, Walter de Back, Kirstin Meyer, Roman L Bogorad, Victor Koteliansky, Lutz Brusch, Yannis Kalaidzidis*, Frank Jülicher*, Benjamin M Friedrich*, Marino Zerial*
Liquid-crystal organization of liver tissue
eLife 2019;8:e44860, doi: 10.7554/eLife.44860 (17 June 2019)
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Niladri Sarkar, Jacques Prost, Frank Jülicher
Field induced cell proliferation and death in a model epithelium
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Hauke Haehne, Jose Casadiego, Joachim Peinke, Marc Timme
Detecting Hidden Units and Network Size from Perceptible Dynamics
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Ingo Nitschke, Sebastian Reuther, Axel Voigt
Hydrodynamic interactions in polar liquid crystals on evolving surfaces
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Stefan Münster, Akanksha Jain, Alexander Mietke, Anastasios Pavlopoulos, Stephan W. Grill, Pavel Tomancak
Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects.
Nature, doi: 10.1038/s41586-019-1044-3 (27 March 2019)

Uwe Freudenberg, Passant Atallah, Yanuar Dwi Putra Limasale, Carsten Werner
Charge-tuning of glycosaminoglycan-based hydrogels to program cytokine sequestration
Faraday Discuss. 219, 244–251 doi: 10.1039/C9FD00016J (22 Feb 2019)

K. Venkatesan Iyer, Romina Piscitello-Gómez, Joris Paijmans, Frank Jülicher, Suzanne Eaton
Epithelial Viscoelasticity is Regulated by Mechanosensitive E-cadherin Turnover
Current Biology 29 (4), 578–591.e5, doi: 10.1016/j.cub.2019.01.021 (18 Feb 2019)

Louise M. Jawerth, Mahdiye Ijavi, Martine Ruer, Shambaditya Saha, Marcus Jahnel, Anthony A. Hyman, Frank Jülicher, and Elisabeth Fischer-Friedrich
Salt-Dependent Rheology and Surface Tension of Protein Condensates Using Optical Traps
Phys. Rev. Lett. 121, 258101 doi: 10.1103/PhysRevLett.121.258101 (18 Dec 2018)