Publications

Lea Happel, Axel Voigt
Coordinated Motion of Epithelial Layers on Curved Surfaces
Phys. Rev. Lett. 132, 078401 doi: 10.1103/PhysRevLett.132.078401 (13 February 2024)

Elena Bachini, Veit Krause, Ingo Nitschke, Axel Voigt
Derivation and simulation of a two-phase fluid deformable surface model
Journal of Fluid Mechanics 977:A41 doi: 10.1017/jfm.2023.943 (21 December 2023)

Piotr Surówka, Anton Souslov, Frank Jülicher, Debarghya Banerjee
Odd Cosserat Elasticity in Active Materials
Phys. Rev. E 108, 064609 doi: 10.1103/PhysRevE.108.064609 (15 December 2023)

Abhinav Singh, Ivo F. Sbalzarini, Anas Obeidat
Entropically damped artificial compressibility for the discretization corrected particle strength exchange method in incompressible fluid mechanics
Computers & Fluids 267, 106074 doi: 10.1016/j.compfluid.2023.106074 (15 December 2023)

Jonathan Bauermann, Giacomo Bartolucci, Job Boekhoven, Christoph A. Weber, Frank Jülicher
Formation of Liquid Shells in Active Droplet systems
Phys. Rev. Research 5, 043246 doi: 10.1103/PhysRevResearch.5.043246 (14 December 2023)

Tommaso Bianucci, Christoph Zechner
A local polynomial moment approximation for compartmentalized biochemical systems
Math Biosci 367:109110 doi: 10.1016/j.mbs.2023.109110 (8 December 2023)

Josefine Metzkes-Ng, Florian-Emanuel Brack, Florian Kroll, Constantin Bernert, Stefan Bock, Elisabeth Bodenstein, Michael Brand, Thomas E. Cowan, René Gebhardt, Stefan Hans, Uwe Helbig, Felix Horst, Jeannette Jansen, Stephan D. Kraft, Mechthild Krause, Elisabeth Leßmann, Steffen Löck, Jörg Pawelke, Thomas Püschel, Marvin Reimold, Martin Rehwald, Christian Richter, Hans-Peter Schlenvoigt, Ulrich Schramm, Michael Schürer, Joao Seco, Emília Rita Szabó, Marvin E. P. Umlandt, Karl Zeil, Tim Ziegler, Elke Beyreuther
The DRESDEN PLATFORM is a research hub for ultra-high dose rate radiobiology
Sci Rep 13(1):20611 doi: 10.1038/s41598-023-46873-8 (23 November 2023)

Ashwin I. D’Souza, Rahul Grover, Gina A. Monzon, Ludger Santen, Stefan Diez
Vesicles driven by dynein and kinesin exhibit directional reversals without regulators
Nat Commun 14, 7532 doi: 10.1038/s41467-023-42605-8 (20 November 2023)

Qinghao Yu, Hannah E Walters, Giovanni Pasquini, Sumeet Pal Singh, Martina Lachnit, Catarina R Oliveira, Daniel León-Periñán, Andreas Petzold, Preethi Kesavan, Cristina Subiran Adrados, Ines Garteizgogeascoa, Dunja Knapp, Anne Wagner, Andrea Bernardos, María Alfonso, Gayathri Nadar, Alwin M Graf, Konstantin E Troyanovskiy, Andreas Dahl, Volker Busskamp, Ramón Martínez-Máñez, Maximina H Yun
Cellular senescence promotes progenitor cell expansion during axolotl limb regeneration
Dev Cell 58(22):2416-2427.e7 doi: 10.1016/j.devcel.2023.09.009 (20 November 2023)

Archit Bhatnagar, Michael Nestler, Peter Gross, Mirna Kramar, Mark Leaver, Axel Voigt, Stephan W. Grill
Axis convergence in C. elegans embryos
Current Biology 33, 1–13 doi: 10.1016/j.cub.2023.10.050 (17 November 2023)

Mansi Gupta, Thomas Kurth, Fabian Heinemann, Petra Schwille, Sebastian Keil, Franziska Knopf, Michael Brand
Fine-tuning of Fgf8 morphogen gradient by heparan sulfate proteoglycans in the extracellular matrix
bioRxiv 2023.11.02.565243 doi: 10.1101/2023.11.02.565243 (2 November 2023)

Aboutaleb Amiri, Charlie Duclut, Frank Jülicher, Marko Popović
Random Traction Yielding Transition in Epithelial Tissues
Phys. Rev. Lett. 131, 188401 doi: 10.1103/PhysRevLett.131.188401 (30 October 2023)

Andreas Hartmann, Koushik Sreenivasa, Mathias Schenkel, Neharika Chamachi, Philipp Schake, Georg Krainer, Michael Schlierf
An automated single-molecule FRET platform for high-content, multiwell plate screening of biomolecular conformations and dynamics
Nat Commun 14, 6511 doi: 10.1038/s41467-023-42232-3 (16 October 2023)

Rohit Krishnan Harish, Mansi Gupta, Daniela Zöller, Hella Hartmann, Ali Gheisari, Anja Machate, Stefan Hans, Michael Brand
Real-time monitoring of an endogenous Fgf8a gradient attests to its role as a morphogen during zebrafish gastrulation
Development 150(19):dev201559 doi: 10.1242/dev.201559 (3 October 2023)

Abhinav Singh, Philipp H. Suhrcke, Pietro Incardona, Ivo F. Sbalzarini
A numerical solver for active hydrodynamics in three dimensions and its application to active turbulence
Physics of Fluids 35(10):105155 doi: 10.1063/5.0169546 (1 October 2023)

Ping Liu, Nils Schumann, Fabian Abele, Fazheng Ren, Marcel Hanke, Yang Xin, Andreas Hartmann, Michael Schlierf, Adrian Keller, Weilin Lin*, Yixin Zhang*
Thermophoretic Analysis of Biomolecules across the Nanoscales in Self-Assembled Polymeric Matrices
ACS Appl. Nano Mater doi: 10.1021/acsanm.3c03623 (10 October 2023)
* corresponding authors

Valentin Ruffine, Andreas Hartmann, Annika Frenzel, Michael Schlierf, Elisabeth Fischer-Friedrich
Twofold Mechanosensitivity Ensures Actin Cortex Reinforcement upon Peaks in Mechanical Tension
Adv. Physics Res, 2300046 doi: 10.1002/apxr.202300046 (3 September 2023)

Belin Selcen Beydag-Tasöz, Joyson Verner D’Costa, Lena Hersemann, Byung Ho Lee, Federica Luppino, Yung Hae Kim, Christoph Zechner, Anne Grapin-Botton
Integrating single-cell imaging and RNA sequencing datasets links differentiation and morphogenetic dynamics of human pancreatic endocrine progenitors
Dev Cell, 2023. 58(21):2292–2308.e6 doi: 10.1016/j.devcel.2023.07.019 (16 August 2023)

Oliver Bludau, Anke Weber, Viktoria Bosak, Veronika Kuscha, Kristin Dietrich, Stefan Hans, Michael Brand
Successful regeneration of the adult zebrafish retina is dependent on inflammatory signaling
bioRxiv 2023.08.11.552956; doi: 10.1101/2023.08.11.552956 (16 August 2023)

Suryanarayana Maddu, Dominik Sturm, Bevan L. Cheeseman, Christian L. Müller, Ivo F. Sbalzarini
STENCIL-NET for equation-free forecasting from data
Sci Rep 13, 12787 doi: 10.1038/s41598-023-39418-6 (7 August 2023)

Justina Stark, Ivo F. Sbalzarini
An open-source pipeline for solving continuous reaction-diffusion models in image-based geometries of porous media
Journal of Computational Science 72, 102118 doi: 10.1016/j.jocs.2023.102118 (7 August 2023)

Abhinav Singh, Alejandra Foggia, Pietro Incardona, Ivo F. Sbalzarini
A Meshfree Collocation Scheme for Surface Differential Operators on Point Clouds
J Sci Comput 96, 89 doi: 10.1007/s10915-023-02313-3 (7 August 2023)

Ryota Takaki, Louise Jawerth, Marko Popović, Frank Jülicher
Theory of Rheology and Aging of Protein Condensates
PRX Life, 1, 013006 doi: 10.1103/PRXLife.1.013006 (4 August 2023)

Veit Krause, Axel Voigt
A numerical approach for fluid deformable surfaces with conserved enclosed volume
Journal of Computational Physics, 486, 112097, doi: 10.1016/j.jcp.2023.112097 (1 August 2023)

Iaroslav Babenko, Nils Kröger, Benjamin M. Friedrich
Mechanism of branching morphogenesis inspired by diatom silica formation
bioRxiv 2023.07.03.547407 doi: 10.1101/2023.07.03.547407 (3 July 2023)

Abhinav Singh, Quentin Vagne, Frank Jülicher, Ivo F. Sbalzarini
Spontaneous Flow Instabilities of Active Polar Fluids in Three Dimensions
Phys. Rev. Research, 5, L022061 doi: 10.1103/PhysRevResearch.5.L022061 (22 June 2023)

Jorge Lázaro, Maria Costanzo, Marina Sanaki-Matsumiya, Charles Girardot, Masafumi Hayashi, Katsuhiko Hayashi, Sebastian Diecke, Thomas B Hildebrandt, Giovanna Lazzari, Jun Wu, Stoyan Petkov, Rüdiger Behr, Vikas Trivedi*, Mitsuhiro Matsuda*, Miki Ebisuya*
A stem cell zoo uncovers intracellular scaling of developmental tempo across mammals
Cell Stem Cell, 30, 938–949, doi: 10.1016/j.stem.2023.05.014 (20 June 2023)
* co-corresponding

Elisa Nerli, Jenny Kretzschmar, Tommaso Bianucci, Mauricio Rocha-Martins, Christoph Zechner, Caren Norden
Deterministic and probabilistic fate decisions co-exist in a single retinal lineage
EMBO J 42(14):e112657 doi: 10.15252/embj.2022112657 (15 May 2023)

Rahul O. Ramakrishnan, Benjamin M. Friedrich
Learning run-and-tumble chemotaxis with support vector machines
EPL 142 47001 doi: 10.1209/0295-5075/acd0d3 (12 May 2023)

Anupam Singh, Joan Antoni Soler, Janelle Lauer, Stephan W. Grill, Marcus Jahnel, Marino Zerial, Shashi Thutupalli
Two-component molecular motor driven by a GTPase cycle
Nat. Phys. doi: 10.1038/s41567-023-02009-3 (4 May 2023)

Veikko F. Geyer, Stefan Diez
Horizontal Magnetic Tweezers to Directly Measure the Force-Velocity Relationship for Multiple Kinesin Motors
Small 2300558 doi: 10.1002/smll.202300558 (10 April 2023)

Hannah E. Walters, Konstantin E. Troyanovskiy, Alwin M. Graf, Maximina H. Yun
Senescent cells enhance newt limb regeneration by promoting muscle dedifferentiation
Aging Cell, 22, e013826 doi: 10.1111/acel.13826 (6 April 2023)

Elena Bachini, Veit Krause, Axel Voigt
The interplay of geometry and coarsening in multicomponent lipid vesicles under the influence of hydrodynamics
Physics of Fluids 35, 042102 doi: 10.1063/5.0145884 (5 April 2023)

Ganesh Agam, Christian Gebhardt, Milana Popara, Rebecca Mächtel, Julian Folz, Benjamin Ambrose, Neharika Chamachi, Sang Yoon Chung, Timothy D. Craggs, Marijn de Boer, Dina Grohmann, Taekjip Ha, Andreas Hartmann, Jelle Hendrix, Verena Hirschfeld, Christian G. Hübner, Thorsten Hugel, Dominik Kammerer, Hyun-Seo Kang, Achillefs N. Kapanidis, Georg Krainer, Kevin Kramm, Edward A. Lemke, Eitan Lerner, Emmanuel Margeat, Kirsten Martens, Jens Michaelis, Jaba Mitra, Gabriel G. Moya Muñoz, Robert B. Quast, Nicole C. Robb, Michael Sattler, Michael Schlierf, Jonathan Schneider, Tim Schröder, Anna Sefer, Piau Siong Tan, Johann Thurn, Philip Tinnefeld, John van Noort, Shimon Weiss, Nicolas Wendler, Niels Zijlstra, Anders Barth, Claus A. M. Seidel, Don C. Lamb, Thorben Cordes
Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins
Nat Methods doi: 10.1038/s41592-023-01807-0 (27 March 2023)

Lucas Kuhrts, Lukas Helmbrecht, Willem L. Noorduin, Darius Pohl, Xiaoxiao Sun, Alexander Palatnik, Cornelia Wetzker, Anne Jantschke, Michael Schlierf, Igor Zlotnikov
Recruiting Unicellular Algae for the Mass Production of Nanostructured Perovskites
Adv. Sci.2023, 2300355 doi: 10.1002/advs.202300355 (12 February 2023)

Christa Ringers, Stephan Bialonski, Mert Ege, Anton Solovev, Jan Niklas Hansen, Inyoung Jeong, Benjamin M Friedrich, Nathalie Jurisch-Yaksi
Novel analytical tools reveal that local synchronization of cilia coincides with tissue-scale metachronal waves in zebrafish multiciliated epithelia
eLife 12:e77701 doi: 10.7554/eLife.77701 (26 January 2023)

Christoph R. Meinecke, Georg Heldt, Thomas Blaudeck, Frida W. Lindberg, Falco C. M. J. M. van Delft, Mohammad Ashikur Rahman, Aseem Salhotra, Alf Månsson, Heiner Linke, Till Korten, Stefan Diez, Danny Reuter, Stefan E. Schulz
Nanolithographic fabrication technologies for network-based biocomputation devices
Materials 16 (3) 1046 doi: 10.3390/ma16031046 (24 January 2023)

Anne-Lena Moor, Christoph Zechner
Dynamic information transfer in stochastic biochemical networks
Physical Review Research 5(1):013032 doi: 10.1103/PhysRevResearch.5.013032 (23 January 2023)

Joël Mabillard, Christoph A. Weber, Frank Jülicher
Heat Fluctuations in Chemically Active Systems
Phys. Rev. E 107, 014118 doi: 10.1103/PhysRevE.107.014118 (13 January 2023)

Alessandro Mongera, Marie Pochitaloff, Hannah J. Gustafson, Georgina A. Stooke-Vaughan, Payam Rowghanian, Sangwoo Kim, Otger Campàs.
Mechanics of the cellular microenvironment as probed by cells in vivo during zebrafish presomitic mesoderm differentiation
Nat. Mater. 22, 135–143 doi: 10.1038/s41563-022-01433-9 (28 December 2022)

Christoph Heintze, Iaroslav Babenko, Jirina Zackova Suchanova, Alastair Skeffington, Benjamin M. Friedrich, Nils Kröger
The molecular basis for pore pattern morphogenesis in diatom silica
Proc Natl Acad Sci U S A 119(49):e2211549119 doi: 10.1073/pnas.2211549119 (2 December 2022)

Keisuke Ishihara, Arghyadip Mukherjee, Elena Gromberg, Jan Brugués, Elly M. Tanaka, Frank Jülicher
Topological Morphogenesis of Neuroepithelial Organoids
Nature Physics, 19, 177–183 (2023) doi: 10.1038/s41567-022-01822-6 (21 November 2022)

Rahul O. Ramakrishnan, Andrea Auconi and Benjamin M. Friedrich
Learning stochastic filtering
EPL 140 31002 doi: 10.1209/0295-5075/ac9d01 (17 November 2022)

Tina Subic, Ivo F. Sbalzarini
A Gaussian jump process formulation of the reaction-diffusion master equation enables faster exact stochastic simulations
J. Chem. Phys. 157, 194110 doi: 10.1063/5.0123073 (17 November 2022)

Frank Jülicher, Jacques Prost, John Toner
Broken Living Layers: Dislocations in Active Smectic Liquid Crystals
Phys. Rev. E 106, 054607 doi: 10.1103/PhysRevE.106.054607 (15 November 2022)

Jingyuan Zhu, Aseem Salhotra, Christoph Robert Meinecke, Pradheebha Surendiran, Roman Lyttleton, Danny Reuter, Hillel Kugler, Stefan Diez, Alf Månsson, Heiner Linke, Till Korten
Solving the 3-SAT problem using network-based biocomputation
Adv. Intell. Syst. 2200202 doi: 10.1002/aisy.202200202 (26 October 2022)

Anna Svirina, Neharika Chamachi, Michael Schlierf
Single-molecule approaches reveal outer membrane protein biogenesis dynamics
BioEssays, 00, e2200149 doi: 10.1002/bies.202200149 (25 October 2022)

Mathias Schenkel, Dorna Ravamehr-Lake, Tomasz Czerniak, James P.Saenz, Georg Krainer, Michael Schlierf, Charles M. Deber
Impact of cholesterol and Lumacaftor on the folding of CFTR helical hairpins
Biochim Biophys Acta Biomembr 184078 doi: 10.1016/j.bbamem.2022.184078 (21 October 2022)

Nicole Poulsen, Helene Hennig, Veikko F Geyer, Stefan Diez, Richard Wetherbee, Sorel Fitz-Gibbon, Matteo Pellegrini, Nils Kröger
On the role of cell surface associated, mucin-like glycoproteins in the pennate diatom Craspedostauros Australis (Bacillariophyceae)
J. Phycol. 59, 54–69 (2023) doi: 10.1111/jpy.13287 (5 October 2022)

Adrian Pascal Nievergelt, Ilia Zykov, Dennis Diener, Aditya Chhatre, Tim-Oliver Buchholz, Markus Delling, Stefan Diez, Florian Jug, Luděk Štěpánek, Gaia Pigino
Conversion of anterograde into retrograde trains is an intrinsic property of intraflagellar transport
Current Biology 32(18), R967–R969 doi: 10.1016/j.cub.2022.07.033 (26 September 2022)

Anastasia Solomatina, Alice Cezanne, Yannis Kalaidzidis, Marino Zerial, Ivo F Sbalzarini
Design centering enables robustness screening of pattern formation models
Bioinformatics, 38, 2022, ii134–ii140 doi: 10.1093/bioinformatics/btac480 (18 September 2022)

Johanna E M Dickmann, Jochen C Rink, Frank Jülicher
Long-range morphogen gradient formation by cell-to-cell signal propagation
Phys. Biol. 19, 066001 doi: 10.1088/1478-3975/ac86b4 (7 September 2022)

Victoria Tianjing Yan, Arjun Narayanan, Tina Wiegand, Frank Jülicher, Stephan W. Grill
A Condensate Dynamic Instability Orchestrates Actomyosin Cortex Activation
Nature. doi: 10.1038/s41586-022-05084-3 (17 August 2022)

Falco C M J M van Delf, Alf Månsson, Hillel Kugler, Till Korten, Cordula Reuther, Jingyuan Zhu, Roman Lyttleton, Thomas Blaudeck, Christoph Robert Meinecke, Danny Reuter, Stefan Diez, Heiner Linke
Roadmap for network-based bio-computation
Nano Futures 6, 032002 doi: 10.1088/2399-1984/ac7d81 (9 August 2022)

Mirco Bonati, Lucas Daniel Wittwer, Sebastian Aland, Elisabeth Fischer-Friedrich
On the role of mechanosensitive binding dynamics in the pattern formation of active surfaces
New J. Phys. 24 073044 doi: 10.1088/1367-2630/ac806d (8 August 2022)

Marie Pochitaloff, Martin Miranda, Mathieu Richard, Atitheb Chaiyasitdhi, Yasuharu Takagi, Wenxiang Cao, Enrique M. De La Cruz, James R. Sellers, Jean-François Joanny, Frank Jülicher, Laurent Blanchoin, Pascal Martin
Flagella-like beating of actin bundles driven by self-organized myosin waves
Nat. Phys. doi: 10.1038/s41567-022-01688-8 (8 August 2022)

Jonathan Bauermann, Christoph A. Weber, Frank Jülicher
Energy and Matter Supply for Active Droplets
Ann. Phys. 2200132. doi: 10.1002/andp.202200132 (3 August 2022)

Tetsuya Yamamoto, Helmut Schiessel
Loop extrusion driven volume phase transition of entangled chromosomes
Biophys J. 121(14):2742-2750. doi: 10.1016/j.bpj.2022.06.014 (19 July 2022)

Lea Happel, D Wenzel, Axel Voigt
Effects of curvature on epithelial tissue – Coordinated rotational movement and other spatiotemporal arrangements
EPL 138 67002 doi: 10.1209/0295-5075/ac757a (7 July 2022)

Pradheebha Surendiran, Christoph Robert Meinecke, Aseem Salhotra, Georg Heldt, Jingyuan Zhu, Alf Månsson, Stefan Diez, Danny Reuter, Hillel Kugler, Heiner Linke, Till Korten
Solving Exact Cover Instances with Molecular-Motor-Powered Network-Based Biocomputation
ACS Nanosci. Au 2(5) 396–403 doi: 10.1021/acsnanoscienceau.2c00013 (23 June 2022)

Suryanarayana Maddu, Bevan L. Cheeseman, Ivo F. Sbalzarini, Christian L. Müller
Stability selection enables robust learning of differential equations from limited noisy data
Proc. R. Soc. A. 478(2262) Art. No. 20210916 doi: 10.1098/rspa.2021.0916 (15 June 2022)

Leonhard Karsch, Jörg Pawelke, Michael Brand, Stefan Hans, Katalin Hideghéty, Jeannette Jansen, Elisabeth Lessmann, Steffen Löck, Michael Schürer, Rico Schurig, Joao Seco, Emília Rita Szabó, Elke Beyreuther
Beam pulse structure and dose rate as determinants for the flash effect observed in zebrafish embryo
Radiother Oncol 173:49–54 doi: 10.1016/j.radonc.2022.05.025 (30 May 2022)

Jens-Uwe Sommer, Holger Merlitz, Helmut Schiessel
Polymer-Assisted Condensation: A Mechanism for Hetero-Chromatin Formation and Epigenetic Memory
Macromolecules 55, 11, 4841–4851 doi: 10.1021/acs.macromol.2c00244 (24 May 2022)

Andrea Auconi, Maja Novak and Benjamin M. Friedrich
Gradient sensing in Bayesian chemotaxis
EPL 138 12001 doi: 10.1209/0295-5075/ac6620 (18 May 2022)

Uwe Töpfer, Karla Yanín Guerra-Santillán, Elisabeth Fischer-Friedrich, Christian Dahmann
Distinct contributions of ECM proteins to basement membrane mechanical properties in Drosophila
Development 149(10):dev200456 doi: 10.1242/dev.200456 (16 May 2022)

Iaroslav Babenko, Benjamin M. Friedrich, Nils Kröger
Structure and Morphogenesis of the Frustule
The Molecular Life of Diatoms (eds Falciatore, A., Mock, T.), Springer, pp. 287–312 doi: 10.1007/978-3-030-92499-7_11 (first online: 12 May 2022)

Nils Kröger
Biomolecules Involved in Frustule Biogenesis and Function
The Molecular Life of Diatoms (eds Falciatore, A., Mock, T.), Springer, pp. 313–343 doi: 10.1007/978-3-030-92499-7_12 (first online: 12 May 2022)

Foram M. Joshi, Gonzalo Alvarez Viar, Gaia Pigino, Hauke Drechsler, Stefan Diez
Fabrication of high aspect ratio gold nanowires within the microtubule lumen
Nano Lett. 22(9) 3659–3667 doi: 10.1021/acs.nanolett.2c00255 (21 April 2022)

Michele Gabriele, Hugo B Brandão, Simon Grosse-Holz, Asmita Jha, Gina M Dailey, Claudia Cattoglio, Tsung-Han S Hsieh, Leonid Mirny, Christoph Zechner, Anders S Hansen
Dynamics of CTCF- and cohesin-mediated chromatin looping revealed by live-cell imaging
Science, 376(6592):496–501 doi: 10.1126/science.abn6583 (14 April 2022)

Carolina Parada, Samhita P. Banavar, Parisa Khalilian, Stephane Rigaud, Arthur Michaut, Yucen Liu, Dennis Manjaly Joshy, Otger Campàs, Jerome Gros
Mechanical feedback defines organizing centers to drive digit emergence
Dev Cell 57(7) 854–866.e6 doi: 10.1016/j.devcel.2022.03.004 (11 April 2022)

Charlie Duclut, Joris Paijmans, Mandar M. Inamdar, Carl D. Modes, Frank Jülicher
Active T1 Transitions in Cellular Networks
Eur. Phys. J. E. 45(29) doi: 10.1140/epje/s10189-022-00175-5 (23 March 2022)

Charlie Duclut, Aboutaleb Amiri, Joris Paijmans, Frank Jülicher
Coarse-grained curvature tensor on polygonal surfaces
SciPost Phys. Core 5, 011 doi: 10.21468/SciPostPhysCore.5.1.011 (11 March 2022)

Tyler S. Harmon and Frank Jülicher
Molecular Assembly Lines in Active Droplets
Phys. Rev. Lett. 128, 108102 doi: 10.1103/PhysRevLett.128.108102 (9 March 2022)

Kamran Hosseini, Palina Trus, Annika Frenzel, Carsten Werner, Elisabeth Fischer-Friedrich
Skin epithelial cells change their mechanics and proliferation upon snail-mediated EMT signalling
Soft Matter 18, 2585-2596 doi: 10.1039/D2SM00159D (8 March 2022)

Roman Renger, Jose A. Morin, Regis Lemaitre, Martine Ruer-Gruss, Frank Jülicher, Andreas Hermann and Stephan W. Grill
Co-condensation of Proteins with Single- and Double-stranded DNA
Proc. Natl. Acad. Sci. USA 119(10), e2107871119 doi: 10.1073/pnas.2107871119 (1 March 2022)

Neharika Chamachi, Andreas Hartmann, Mai Quynh Ma , Anna Svirina, Georg Krainer, Michael Schlierf
Chaperones Skp and SurA dynamically expand unfolded OmpX and synergistically disassemble oligomeric aggregates
PNAS 119 (9) e2118919119 doi: 10.1073/pnas.2118919119 (25 February 2022)

Veit Krause, Axel Voigt
Deformable active nematic particles and emerging edge currents in circular confinements
Eur. Phys. J. E 45, 14 doi: 10.1140/epje/s10189-022-00162-w (17 February 2022)

Suryanarayana Maddu, Dominik Sturm, Christian L. Müller and Ivo F. Sbalzarini
Inverse Dirichlet weighting enables reliable training of physics informed neural networks
Machine Learning: Science and Technology, Volume 3, Number 1 doi: 10.1088/2632-2153/ac3712 (15 February 2022)

Juan M Iglesias-Artola, Björn Drobot, Mrityunjoy Kar, Anatol Fritsch, Hannes Mutschler, T-Y Dora Tang, Moritz Kreysing
Charge-density reduction promotes ribozyme activity in RNA-peptide coacervates via RNA fluidization and magnesium partitioning
Nature Chemistry 2022 doi: 10.1038/s41557-022-00890-8 (14 February 2022)

Maria Romanova-Michaelides, Zena Hadjivasiliou, Daniel Aguilar-Hidalgo, Dimitris Basagiannis, Carole Seum, Marine Dubois, Frank Jülicher, Marcos Gonzalez-Gaitan
Morphogen gradient scaling by recycling of intracellular Dpp
Nature 602, 287–293 doi: 10.1038/s41586-021-04346-w (10 February 2022)

Benjamin A. Dalton, David Oriola, Franziska Decker, Frank Jülicher, Jan Brugués
A Gelation Transition Enables the Self-organization of Bipolar Metaphase Spindles
Nat. Phys. doi: 10.1038/s41567-021-01467-x (10 February 2022)

Barbara Scalvini, Helmut Schiessel, Anatoly Golovnev, Alireza Mashaghi
Circuit topology analysis of cellular genome reveals signature motifs, conformational heterogeneity, and scaling
iScience 25(3):103866 doi: 10.1016/j.isci.2022.103866 (5 February 2022)

Jose A. Morin, Sina Wittmann, Sandeep Choubey, Adam Klosin, Stefan Golfier, Anthony A. Hyman, Frank Jülicher, Stephan W. Grill
Sequence-dependent Surface Condensation of a Pioneer Transcription Factor on DNA
Nat. Phys. doi: 10.1038/s41567-021-01462-2 (3 February 2022)

Cordula Reuther, Paula Santos-Otte, Rahul Grover, Georg Heldt, Günther Woehlke, Stefan Diez
Multiplication of Motor-driven Microtubules for Nanotechnological Applications
Nano Lett. 22(3) 926–934 doi: 10.1021/acs.nanolett.1c03619 (20 January 2022)

David T. Gonzales, Naresh Yandrapalli, Tom Robinson, Christoph Zechner, T-Y. Dora Tang
Cell-Free Gene Expression Dynamics in Synthetic Cell Populations
ACS Synth Biol 11(1):205–215 doi: 10.1021/acssynbio.1c00376 (4 January 2022)

Jesse V. Veenvliet, Pierre-François Lenne, David A. Turner, Iftach Nachman, Vikas Trivedi
Sculpting with stem cells: how models of embryo development take shape
Development 148 (24): dev192914 doi: 10.1242/dev.192914 (15 December 2021)

Karl B. Hoffmann, Ivo F. Sbalzarini
Estimation of unordered core size using a robustness measure for topological defects in discretized orientation and vector fields
Proc. Appl. Math. Mech., 21(1): e202100105 doi: 10.1002/pamm.202100105 (14 December 2021)

Robert Kuschmierz, Elias Scharf, David F. Ortegón-González, Tom Glosemeyer, Jürgen W. Czarske
Ultra-thin 3D lensless fiber endoscopy using diffractive optical elements and deep neural networks
Light: Advanced Manufacturing 2, Article number: 30 doi: 10.37188/lam.2021.030 (6 December 2021)

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PLoS ONE 15(2): e0229230 doi: 10.1371/journal.pone.0229230 (27 February 2020)

Georg Krainer, Mathias Schenkel, Andreas Hartmann, Dorna Ravamehr-Lake, Charles M. Deber, Michael Schlierf
CFTR transmembrane segments are impaired in their conformational adaptability by a pathogenic loop mutation and dynamically stabilized by Lumacaftor
J. Biol. Chem. 295:1985–1991 doi: 10.1074/jbc.AC119.011360 (14 February 2020)

Adam Klosin, Florian Oltsch, Tyler Harmon, Alf Honigmann, Frank Jülicher, Anthony Hyman, Christoph Zechner
Phase separation provides a mechanism to reduce noise in cells
Science 367(6476):464–468. doi: 10.1126/science.aav6691 (24 January 2020)

Kaushikaram Subramanian, Martin Weigert, Oliver Borsch, Heike Petzold, Alfonso Garcia-Ulloa, Eugene W Myers, Marius Ader, Irina Solovei, Moritz Kreysing
Rod nuclear architecture determines contrast transmission of the retina and behavioral sensitivity in mice
eLife 2019;8:e49542 doi: 10.7554/eLife.49542 (11 December 2019)

Hauke Drechsler, Yong Xu, Veikko F. Geyer, Yixin Zhang, Stefan Diez
Multivalent electrostatic microtubule-interactions of synthetic peptides are sufficient to mimic advanced MAP-like behaviour
Mol Biol Cell 30(24), 2953–2968 doi: 10.1091/mbc.E19-05-0247 (14 November 2019)

Oliver Beutel, Riccardo Maraspini, Karina Pombo-García, Cécilie Martin-Lemaitre, Alf Honigmann
Phase Separation of Zonula Occludens Proteins Drives Formation of Tight Junctions
Cell 179(4), 923-936.e11 doi: 10.1016/j.cell.2019.10.011 (31 October 2019)

Alexander Mietke, V. Jemseena, K. Vijay Kumar, Ivo F. Sbalzarini, Frank Jülicher
Minimal model of cellular symmetry breaking
Phys. Rev. Lett. 123, 188101 doi: 10.1103/PhysRevLett.123.188101 (28 October 2019)

Aryaman Gupta, Ulrik Günther, Pietro Incardona, Ata Deniz Aydin, Raimund Dachselt, Stefan Gumhold, Ivo F. Sbalzarini
A Proposed Framework for Interactive Virtual Reality In Situ Visualization of Parallel Numerical Simulations
IEEE 9th Symposium on Large Data Analysis and Visualization (LDAV), Vancouver, BC, Canada, 2019, pp. 95–96, doi: 10.1109/LDAV48142.2019.8944368 (21 October 2019)

Johannes Baumgart, Marcel Kirchner, Stefanie Redemann, Alec Bond, Jeffrey Woodruff, Jean-Marc Verbavatz, Frank Jülicher, Thomas Müller-Reichert, Anthony A. Hyman, Jan Brugués
Soluble tubulin is significantly enriched at mitotic centrosomes
J. Cell Biol. jcb.201902069; doi: 10.1083/jcb.201902069 (21 October 2019)

Moritz Kreysing
Probing the Functional Role of Physical Motion in Development
Dev Cell, 51(2) 135-144 doi: 10.1016/j.devcel.2019.10.002 (21 October 2019)

Azaam Aziz, Mariana Medina-Sánchez*, Nektarios Koukourakis, Jiawei Wang, Robert Kuschmierz, Hannes Radner, Jürgen W. Czarske, Oliver G. Schmidt*
Real-Time IR Tracking of Single Reflective Micromotors through Scattering Tissues
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Jana Sievers, Stefan Zschoche, Ron Dockhorn, Jens Friedrichs, Carsten Werner, Uwe Freudenberg
Temperature-Induced Mechanomodulation of Interpenetrating Networks of Star Poly(ethylene glycol)–Heparin and Poly(N-isopropylacrylamide)
ACS Appl. Mater. Interfaces 2019, 11, 45, 41862–41874 doi: 10.1021/acsami.9b11719 (7 October 2019)

Benedikt Krug, Nektarios Koukourakis, and Juergen W. Czarske
Impulsive stimulated Brillouin microscopy for non-contact, fast mechanical investigations of hydrogels
Optics Express 27 (19), 26910–26923 doi: 10.1364/OE.27.026910 (16 September 2019)

Malte Schröder and Marc Timme
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Phys. Rev. Research 1, 023012 doi: 10.1103/PhysRevResearch.1.023012 (10 September 2019)

Charlie Duclut, Niladri Sarkar, Jacques Prost, Frank Jülicher
Fluid pumping and active flexoelectricity can promote lumen nucleation in cell assemblies
Proc. Natl. Acad. Sci. USA, 116, 19264 doi: 10.1073/pnas.1908481116 (6 September 2019)

Axel Voigt
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Valerie Siahaan, Jochen Krattenmacher, Anthony A. Hyman, Stefan Diez, Amayra Hernández-Vega, Zdenek Lansky, Marcus Braun
Kinetically distinct phases of tau on microtubules regulate kinesin motors and severing enzymes
Nat. Cell Biol. 21, 1086–1092, doi: 10.1038/s41556-019-0374-6 (2 September 2019)

Caren Norden, Virginie Lecaudey
Collective cell migration: general themes and new paradigms
Curr Opin Genet Dev. 57, 54–60. doi: 10.1016/j.gde.2019.06.013 (18 August 2019)

Xiaozhu Zhang, Sarah Hallerberg, Moritz Matthiae, Dirk Witthaut, Marc Timme
Fluctuation-Induced Distributed Resonances in Oscillatory Networks
Science Adv. 5:eaav1027 doi: 10.1126/sciadv.aav1027 (31 July 2019)

Mathieu Richard, Carles Blanch-Mercader, Hajer Ennomani, Wenxiang Cao, Enrique M. De La Cruz, Jean-François Joanny, Frank Jülicher, Laurent Blanchoin, and Pascal Martin
Active cargo positioning in antiparallel transport networks
PNAS 116 (30) 14835–14842 doi: 10.1073/pnas.1900416116 (9 July 2019)

Hernán Morales-Navarrete, Hidenori Nonaka, André Scholich, Fabián Segovia-Miranda, Walter de Back, Kirstin Meyer, Roman L Bogorad, Victor Koteliansky, Lutz Brusch, Yannis Kalaidzidis*, Frank Jülicher*, Benjamin M Friedrich*, Marino Zerial*
Liquid-crystal organization of liver tissue
eLife 2019;8:e44860, doi: 10.7554/eLife.44860 (17 June 2019)
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Niladri Sarkar, Jacques Prost, Frank Jülicher
Field induced cell proliferation and death in a model epithelium
New J. Phys. 21 043035 doi: 10.1088/1367-2630/ab0a8d (17 April 2019)

Hauke Haehne, Jose Casadiego, Joachim Peinke, Marc Timme
Detecting Hidden Units and Network Size from Perceptible Dynamics
Phys. Rev. Lett. 122, 158301 doi: 10.1103/PhysRevLett.122.158301 (16 April 2019)

Ingo Nitschke, Sebastian Reuther, Axel Voigt
Hydrodynamic interactions in polar liquid crystals on evolving surfaces
Phys. Rev. Fluids, doi: 10.1103/PhysRevFluids.4.044002 (8 April 2019)

Stefan Münster, Akanksha Jain, Alexander Mietke, Anastasios Pavlopoulos, Stephan W. Grill, Pavel Tomancak
Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects
Nature, doi: 10.1038/s41586-019-1044-3 (27 March 2019)

Uwe Freudenberg, Passant Atallah, Yanuar Dwi Putra Limasale, Carsten Werner
Charge-tuning of glycosaminoglycan-based hydrogels to program cytokine sequestration
Faraday Discuss. 219, 244–251 doi: 10.1039/C9FD00016J (22 February 2019)

K. Venkatesan Iyer, Romina Piscitello-Gómez, Joris Paijmans, Frank Jülicher, Suzanne Eaton
Epithelial Viscoelasticity is Regulated by Mechanosensitive E-cadherin Turnover
Current Biology 29 (4), 578–591.e5, doi: 10.1016/j.cub.2019.01.021 (18 February 2019)

Louise M. Jawerth, Mahdiye Ijavi, Martine Ruer, Shambaditya Saha, Marcus Jahnel, Anthony A. Hyman, Frank Jülicher, and Elisabeth Fischer-Friedrich
Salt-Dependent Rheology and Surface Tension of Protein Condensates Using Optical Traps
Phys. Rev. Lett. 121, 258101 doi: 10.1103/PhysRevLett.121.258101 (18 December 2018)